1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...taacatcactagttcaatacccatgaattgtttgtgcattttgccaatcttcttgatatttggtaataatggtcttatttatactgttgttgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAAACACCAGTGAGGTGGAGATACTCTGTTTGGAACGGTTG
species | Oryza sativa |
transcript | LOC_Os05g43560.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|88261850|gb|CI365426.1|CI365426
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AG-AAATGATAGATACCACATACACTGCAAATATTAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|58690350|gb|CK079037.1|CK079037
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCAGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|88221933|gb|CI221889.1|CI221889
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|86260924|gb|CI066599.1|CI066599
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|88830844|gb|CI079278.1|CI079278
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|88830954|gb|CI080378.1|CI080378
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|33683327|gb|CF311566.1|CF311566
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|88247112|gb|CI246961.1|CI246961
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|88908200|gb|CI090795.1|CI090795
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|89179789|gb|CI044068.1|CI044068
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: ATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAEST: gi|29633653|gb|CB638662.1|CB638662
genomic: ATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
EST: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAG AATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
genomic: AGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGgtaatctttt ... tgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCA
aatcttcttgatatttggtaataatggtcttatttatactgttgttgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAAACACCAGTGAGGTGGAGATACTCTGTTTGGAACGGTTG
tcttgat putative branch site (score: 7)
atatttggtaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacatcactagttcaatacccatgaattgtttgtgcattttgccaatcttcttgatatttggtaataatggtcttatttatactgttgttgagttgcagAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAAACACCAGTGAGGTGGAGATACTCTGTTTGGAACGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
-aacatca
- - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt