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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttatttccataattaattatgtacaactgcagctggttataaatttatctgatttggcattgaagtgctgtgttttagcaacatttgtctatgctcaaaatacacatgtaaaaaccttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCATCTCATCAGGGAACAAGCCAGTTTGTGACAGAGGTTGCGACAATTTCCG

Basic information

species Oryza sativa
transcript LOC_Os05g17604.4
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672836|gb|CB669111.1|CB669111
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29664574|gb|CB660849.1|CB660849
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29675944|gb|CB672219.1|CB672219
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29627532|gb|CB632543.1|CB632543
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29624376|gb|CB629387.1|CB629387
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29630956|gb|CB635965.1|CB635965
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29622648|gb|CB627659.1|CB627659
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29676653|gb|CB672928.1|CB672928
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29627200|gb|CB632211.1|CB632211
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
EST: gi|29680540|gb|CB676815.1|CB676815
EST:     TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAG                         GGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA
genomic: TCAGTTCTCAAAATATTCTAGGCGAAGGTGGATTCGGGCCAGTGTATAAGgttctttatt ... accttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttttagcaacatttgtctatgctcaaaatacacatgtaaaaaccttggcagGGTAAGCTACCTGATGAAAGAGTTATAGCTGTGAAGCAACTTTCACAATCATCTCATCAGGGAACAAGCCAGTTTGTGACAGAGGTTGCGACAATTTCCG
                                     atgtaaaaa  TA-rich tract