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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaccacactaaaacaacagcaggaagtgttatattcgctgccgataaataatatttttcctttgcagATTTTACTCCTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAGGTGCAATTTCCGGAATATTGATTGGTGCAATAGTTTTAGTATTAGCAGC

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29676653|gb|CB672928.1|CB672928
EST:     TAAAGATAATTACTATGGGCCAATGATCTCAGCATTGAGCGTCACTCCAA                         ATTTTACTCTTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAG
genomic: TAAAGATAATTACTATGGGCCAATGATCTCAGCATTGAGCGTCACTCCAAgtaagcacca ... tcctttgcagATTTTACTCCTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAG
EST: gi|29664574|gb|CB660849.1|CB660849
EST:     ACTATGGGCCAATGATCTCAGCATTGAGCGTCACTCCAA                         ATTTTACTCCTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAG
genomic: ACTATGGGCCAATGATCTCAGCATTGAGCGTCACTCCAAgtaagcacca ... tcctttgcagATTTTACTCCTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAG
EST: gi|29672836|gb|CB669111.1|CB669111
EST:     GCATTGAGCGTCACTCCAA                         ATTTTACTCCTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAG
genomic: GCATTGAGCGTCACTCCAAgtaagcacca ... tcctttgcagATTTTACTCCTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacagcaggaagtgttatattcgctgccgataaataatatttttcctttgcagATTTTACTCCTACCGTTCGAAACGGCATACCAAAAAGGAAAAGTAAAGCAGGTGCAATTTCCGGAATATTGATTGGTGCAATAGTTTTAGTATTAGCAGC
                                       tatttttcctttgc  CT-rich tract
                               ataaataatatttttc  TA-rich tract