1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagcacaatatttttagttgactgcaactaggattatattggcttcttatgtgtaaaaccattttcttcagATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAGGTGCAATTGTTGGAATAGTGATTGGTGCATCAGTTTTAGGATTGGCAGC
species | Oryza sativa |
transcript | LOC_Os05g16824.3 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAA ATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAGEST: gi|218482657|gb|FG955336.1|FG955336
genomic: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaagcacaa ... ttttcttcagATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAG
EST: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAA ATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAGEST: gi|29627080|gb|CB632091.1|CB632091
genomic: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaagcacaa ... ttttcttcagATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAG
EST: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAA ATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAGEST: gi|88383614|gb|CI543387.1|CI543387
genomic: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaagcacaa ... ttttcttcagATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAG
EST: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAA ATTTTACTCCCACTGTACGGAATGGGGTACC
genomic: TACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaagcacaa ... ttttcttcagATTTTACTCCCACTGTACGGAATGGGGTACC
gttgactgcaactaggattatattggcttcttatgtgtaaaaccattttcttcagATTTTACTCCCACTGTACGGAATGGGGTACCAAAAAAGAGAAGTAAAGCAGGTGCAATTGTTGGAATAGTGATTGGTGCATCAGTTTTAGGATTGGCAGC
agttgac putative branch site (score: 17)
ccattttcttc putative PPT
attatatt TA-rich tract