1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtacaaattgaatgcattgtaaatcttttagttctttatctgaatgtattattgaaattggtatagGGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAATCTTTTACTGCAGTTAACAGGAGCTACACAGCAACTGTGTCGAAAAACT
species | Oryza sativa |
transcript | LOC_Os05g16824.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAG GGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAAEST: gi|88852433|gb|CI374201.1|CI374201
genomic: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAGgtacaaattg ... attggtatagGGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAA
EST: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAG GGTGCACTGAAAGAAAAGAATTTEST: gi|218482657|gb|FG955336.1|FG955336
genomic: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAGgtacaaattg ... attggtatagGGTGCACTGAAAGAAAAGAATTT
EST: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAG GGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAAEST: gi|29627080|gb|CB632091.1|CB632091
genomic: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAGgtacaaattg ... attggtatagGGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAA
EST: CCCCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAG GGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAAEST: gi|88383614|gb|CI543387.1|CI543387
genomic: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAGgtacaaattg ... attggtatagGGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAA
EST: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAG GGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAA
genomic: CACCGACTTGGCAAAGCTTAGGAAGGAGAGTTTTTGACATATATGTTCAGgtacaaattg ... attggtatagGGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAA
atgcattgtaaatcttttagttctttatctgaatgtattattgaaattggtatagGGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAATCTTTTACTGCAGTTAACAGGAGCTACACAGCAACTGTGTCGAAAAACT
aatgtattattgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaattgaatgcattgtaaatcttttagttctttatctgaatgtattattgaaattggtatagGGTGCACTGAAAGAAAAGAATTTCGATATAAGGAAGACAGCAGGTGGAAAATCTTTTACTGCAGTTAACAGGAGCTACACAGCAACTGTGTCGAAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT