1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtactgtgggctgctctctccttgataaattattttcaaatttacatccacgcaatcgtgctcctctgaaatctgaacactgaacttctatatattcagGAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAGGGGAGAATTTGAATCTATAGAAAGGCCAATGCTAAGCATAGAAGCTAAT
species | Oryza sativa |
transcript | LOC_Os05g06980.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GCTGATTACATAAAGAAGTTATTTTACTCTGAGCAAAGGGCTAATTCTAG GAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAGEST: gi|27577872|gb|CB000567.1|CB000567
genomic: GCTGATCACATAAAGAAGTTATTTTACTCTGAGCAATGGGCTAATTCTAGgtactgtggg ... atatattcagGAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAG
EST: GCTGATCACATAAAGAAGTTATTTTACTCTGAGCAAAGGGCTAATTCTAG GAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAGEST: gi|116875531|gb|EC366039.1|EC366039
genomic: GCTGATCACATAAAGAAGTTATTTTACTCTGAGCAATGGGCTAATTCTAGgtactgtggg ... atatattcagGAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAG
EST: GCTGATTACATAAAGAAGTTATTTTACTCTGAGCAAAGGGCTAATTCTAG GAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAG
genomic: GCTGATCACATAAAGAAGTTATTTTACTCTGAGCAATGGGCTAATTCTAGgtactgtggg ... atatattcagGAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAG
catccacgcaatcgtgctcctctgaaatctgaacactgaacttctatatattcagGAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAGGGGAGAATTTGAATCTATAGAAAGGCCAATGCTAAGCATAGAAGCTAAT
cttctat CT-rich tract
aacttctatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtgggctgctctctccttgataaattattttcaaatttacatccacgcaatcgtgctcctctgaaatctgaacactgaacttctatatattcagGAGAGATGATCCAGAGGTCAAGAACCTAATTGCCGAGATCGAGAAATTGAGGGGAGAATTTGAATCTATAGAAAGGCCAATGCTAAGCATAGAAGCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC