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gtgaggcacataccattcacacactatagcctctgtaccgtttttctgtgattttcttttcctaacaagtttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTGCCATCTACTTCAAGTACTTAATATTGAGCATGGAGAAAAAAGAACCTTT
species | Oryza sativa |
transcript | LOC_Os04g55730.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GATGTGGTTTGACAACACCAAAACGAAAGCTAGCCTGCTTCGTGATTATG CAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTGEST: gi|88232721|gb|CI232570.1|CI232570
genomic: GATGTGGTTTGACAACACCAAAACGAAAGCTAGCCTGCTTCGTGATTATGgtgaggcaca ... tttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTG
EST: GATGTGGTTTGACAACACCAAAACGAAAGCTAGCCTGCTTCGTGATTATG CAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTGEST: gi|15855353|gb|BI808165.1|BI808165
genomic: GATGTGGTTTGACAACACCAAAACGAAAGCTAGCCTGCTTCGTGATTATGgtgaggcaca ... tttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTG
EST: GATGTGGTTTGAC-ACACC-AAACGAAAGCTAGCCTGCTTCGTGATTATG CAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCACAGGGCTEST: gi|88234356|gb|CI234205.1|CI234205
genomic: GATGTGGTTTGACAACACCAAAACGAAAGCTAGCCTGCTTCGTGATTATGgtgaggcaca ... tttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCA-AGGGCT
EST: GCTTCGTGATTATG CAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTGEST: gi|29663000|gb|CB659275.1|CB659275
genomic: GCTTCGTGATTATGgtgaggcaca ... tttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTG
EST: GATGTGGTTTGACAACACCAAAACGAAAGCTAGCCTGCTTCGTGATTATG CAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTG
genomic: GATGTGGTTTGACAACACCAAAACGAAAGCTAGCCTGCTTCGTGATTATGgtgaggcaca ... tttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTG
tatagcctctgtaccgtttttctgtgattttcttttcctaacaagtttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTGCCATCTACTTCAAGTACTTAATATTGAGCATGGAGAAAAAAGAACCTTT
tcctaac putative branch site (score: 1)
attttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcacataccattcacacactatagcctctgtaccgtttttctgtgattttcttttcctaacaagtttcacgcagCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTGCCATCTACTTCAAGTACTTAATATTGAGCATGGAGAAAAAAGAACCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC