1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...actcattgtgccttctggcttctcaaaaacatttgggaattgttggaaatttggaatataatttctgcttgtttccttggttgtgaacttgtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGGAAGATCTCTCAGTTTTCTATGATCAGACGGTCCGCAATGCTAGTGGTG
species | Oryza sativa |
transcript | LOC_Os04g41490.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCG GTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGEST: gi|88728981|gb|CI752491.1|CI752491
genomic: AATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGgtatgtctat ... gtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTG
EST: ATGGGTGGGCGAGAAGGTCTTGTTGATACCGCG GTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGEST: gi|33794691|gb|CF323231.1|CF323231
genomic: ATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGgtatgtctat ... gtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTG
EST: AATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCG GTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGEST: gi|58659593|gb|CK048273.1|CK048273
genomic: AATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGgtatgtctat ... gtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTG
EST: AATTCTTCTGCGATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCG GTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGEST: gi|58667561|gb|CK056247.1|CK056247
genomic: AATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGgtatgtctat ... gtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTG
EST: AATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCG GTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTG
genomic: AATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGgtatgtctat ... gtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTG
gaaatttggaatataatttctgcttgtttccttggttgtgaacttgtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGGAAGATCTCTCAGTTTTCTATGATCAGACGGTCCGCAATGCTAGTGGTG
ttggaatataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcattgtgccttctggcttctcaaaaacatttgggaattgttggaaatttggaatataatttctgcttgtttccttggttgtgaacttgtgatcgtagGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATGAAGGGATTGGAAGATCTCTCAGTTTTCTATGATCAGACGGTCCGCAATGCTAGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - ccttctg
- - - - - - - - -gcttctc
- - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - attgttg