1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gttagtcagattgtctctacaacgagatttcttgttttagtcctttccagacccttaaatggtgttctcatctaactttctacagtatgctgttctactatgcagGAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAA
species | Oryza sativa |
transcript | LOC_Os04g14654.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ACATGCCCTTGTTATACAATCTGGAAAAGGCTGGCCTATTTAAGCGCCAG GAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTTEST: gi|66928780|gb|CX115628.1|CX115628
genomic: ACATGCCCTTGTTATACAATCTGGAAAAGGCTGGCCTATTTAAGCGCCAGgttagtcaga ... tactatgcagGAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTT
EST: ACATGCCCTTGTTATACAATCTGGAAAGGG-TGGNCTATTTAAGCGCCAG GAATCA-GAAGTACCTG-AGTGGT-TTACA-GGGCTCTAEST: gi|163917728|gb|EG711274.1|EG711274
genomic: ACATGCCCTTGTTATACAATCTGGAAAAGGCTGGCCTATTTAAGCGCCAGgttagtcaga ... tactatgcagGAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTA
EST: ACATGCCCTTGTTATACAATCTGGAAAAGGCTGGCCTATTTAAGCGCCAG GAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTTEST: gi|28298184|gb|CB238414.1|CB238414
genomic: ACATGCCCTTGTTATACAATCTGGAAAAGGCTGGCCTATTTAAGCGCCAGgttagtcaga ... tactatgcagGAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTT
EST: ACATGCCCTTGTTATACAATCTGGAAAAGGCTGGCCCATTTAAGCGCCAG GAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTT
genomic: ACATGCCCTTGTTATACAATCTGGAAAAGGCTGGCCTATTTAAGCGCCAGgttagtcaga ... tactatgcagGAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTT
acccttaaatggtgttctcatctaactttctacagtatgctgttctactatgcagGAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAA
atctaac putative branch site (score: 2)
ctgttct putative PPT
taacttt TA-rich tract