1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...gctatattgacactgtagaatagagatgctacaactttatttaatccaatccttctcttccctggttcaagtgttcattgaaatattacgcttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG
species | Oryza sativa |
transcript | LOC_Os04g11880.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCEST: gi|218488547|gb|FG955820.1|FG955820
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
EST: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCEST: gi|58688189|gb|CK076876.1|CK076876
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
EST: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCEST: gi|58692342|gb|CK081029.1|CK081029
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
EST: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACEST: gi|218492660|gb|FG966164.1|FG966164
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGAC
EST: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
ccaatccttctcttccctggttcaagtgttcattgaaatattacgcttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG
cgctttt CT-rich tract
ttcattgaaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatattgacactgtagaatagagatgctacaactttatttaatccaatccttctcttccctggttcaagtgttcattgaaatattacgcttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG
- - - - - - - - agaataga
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