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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAAACTTTTCAAGAGCCATTCTAGAATGCTT

Basic information

species Oryza sativa
transcript LOC_Os03g50480.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 17
gtaagacatccgcgctgtatattggc-tttgccttttggaccgttttc-cgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatc-cagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAAACTTTTCAAGAGCCATTCTAGAATGCTT-
          |    |||  |    | ||||  |  ||  || ||  | |    || | | |       ||   | | |||  | || |  || | ||      || || ||| |||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| |||||||| |||||||||| |||| |||||  ||| || ||||  | 
----------cttagtgtgaagaaacatttggatcgtgatccattaccacccctaaatataccttgggcttatgtgaaactgca-tttactaattttg------tgtttcatctcagGTTGATGTTGCGCTCAAGCTCTCCAAGATGCAAGAGTACACTGGCCGCTCTGCCCCCACCGTTATCACATAAATTTTTGAAGAGTGATT-TACAATGAGTT

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G109383_T02 (Zea mays), 3'ss of exon 17
gtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatcc-agGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAAACTTTTCAAGAGCCATTCTAGAATGCTT--
|||||| | |  |  ||      |||| |||| ||| ||   ||  | |||||   |  |  |||||   |||| |    | |  | ||   |   |   | ||  | |||| ||||||||||||| || ||||| || |||||||||||||||||||| || ||||| ||||||||||||||||||| |||| |||||   || |||||||  |  
gtaagatacctaccatgc-----ggctatgccctttcga---ttcacagagca---taacataccttgggcttctg----tgaaactgcgtttactaatttgtgtctcatcccagGTTGATGTTGCGCTCAAGCTCTCCAAGATGCAAGAGTACACTGGACGCTCTGCCCCCACCGTCATCACATAAA-TTTTGAAGAGT-GTTTTAGAATGAGTTG

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 17
lower sequence: AT1G70730.1 (Arabidopsis thaliana), 3'ss of exon 17
gtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAA---ACTTTTCAAGAGCCATT--CTAGAATGCTT
                  | |||  |   |     |  |    |  || |             |  | ||  |||   ||     || ||| | |     |||| |||   ||||||||||||||| | |||||||| || |||||||||| ||| ||||||||  | || || || || ||||||   |  |||||  || |  |  ||  ||     
---------------gtcagatt--cccagataccttaattactc-ccaaatttacgcataatcgatctttgtcatgtttattaacaccaattgttggtgtctgattttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCATCACCAACTGTTATTACATAAGACAGCTTTCAGAAGACGCTGTCTCCAA-----

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 17
lower sequence: AT1G70730.2 (Arabidopsis thaliana), 3'ss of exon 18
gtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAAACTTTTCAAGAGCCATTCTAGAATGCTT
                  | |||  |   |     |  |    |  || |             |  | ||  |||   ||     || ||| | |     |||| |||   ||||||||||||||| | |||||||| || |||||||||| ||| ||||||||  | || || || || ||||||                            
---------------gtcagatt--cccagataccttaattactc-ccaaatttacgcataatcgatctttgtcatgtttattaacaccaattgttggtgtctgattttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCATCACCAACTGTTATTACATAA----------------------------

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 17
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 3'ss of exon 17
gtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagt-ttgcggacctttttcttcaga------ctttaattcagcaaat--ctgaccatctgctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAAACTTTTCAAGAGCCATTCTAGAATGCTT------
    | ||   ||    ||||    ||        |  || |||||||||   | |       | ||  | |   ||       || ||||  |  |  |   ||   || ||   |   ||||||||  | || || |||||||| |||||| |||||| ||| |||||||| || ||||||||||| ||||||       ||| | ||  ||  |   ||       
----gtcagttgcttactataaaacctcaaatccataaactgttttccgactcattaccatttagctaataccaaaggggttttctctaatcaaatacgtaattgttgatgtgtgattcacagGTTGACTTAGCTCTAAAGCTGTCGAAGATGGAAGAGTTCACAGGCCGATCAGCCCCCACCGTCATAACATAAG------AAGGGTCAAGCTCAACGACTCAAACCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88906039|gb|CI089625.1|CI089625
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88908259|gb|CI090852.1|CI090852
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88270362|gb|CI385620.1|CI385620
EST:     AGGATTCTTCCAAGACCGCCAGGGATTCCCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88840520|gb|CI079974.1|CI079974
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTAGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29671541|gb|CB667816.1|CB667816
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58663229|gb|CK051915.1|CK051915
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88983385|gb|CI028621.1|CI028621
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15853002|gb|BI805798.1|BI805798
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAA-GATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88295690|gb|CI530253.1|CI530253
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29682385|gb|CB678660.1|CB678660
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGCCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86836105|gb|CI346160.1|CI346160
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88304742|gb|CI520597.1|CI520597
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|3767813|gb|AU031840.1|AU031840
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29689599|gb|CB685874.1|CB685874
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58679829|gb|CK068516.1|CK068516
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88248753|gb|CI248602.1|CI248602
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88965715|gb|CI006605.1|CI006605
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86494207|gb|CI136840.1|CI136840
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88252219|gb|CI350647.1|CI350647
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86433328|gb|CI093671.1|CI093671
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29671585|gb|CB667860.1|CB667860
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89175546|gb|CI042567.1|CI042567
EST:     AGAATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89175641|gb|CI042662.1|CI042662
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86494708|gb|CI137341.1|CI137341
EST:     AGGATTTTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86479043|gb|CI121676.1|CI121676
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88219887|gb|CI219447.1|CI219447
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|7332534|gb|AU085880.1|AU085880
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88831443|gb|CI083837.1|CI083837
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88902184|gb|CI374792.1|CI374792
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|8324586|gb|AU091730.1|AU091730
EST:     ACCGGCAGGGATCCGCAGGATGCCCTTGCTCCTCTG                         GTTGATG-TGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: ACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|33656202|gb|CF278816.1|CF278816
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88554537|gb|CI484727.1|CI484727
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88274732|gb|CI395138.1|CI395138
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58662891|gb|CK051577.1|CK051577
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88461491|gb|CI526999.1|CI526999
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88250414|gb|CI348644.1|CI348644
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|8856483|gb|AU093801.1|AU093801
EST:     AGGATTCTTCCAAGNCCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86866331|gb|CI336942.1|CI336942
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15855630|gb|BI808442.1|BI808442
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89192998|gb|CI050296.1|CI050296
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89174464|gb|CI110662.1|CI110662
EST:     AGGATTCTTCCAAGACCGNCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88414031|gb|CI531003.1|CI531003
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATC
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCT-Ggtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATC
EST: gi|10931022|gb|AU161296.1|AU161296
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88272851|gb|CI386111.1|CI386111
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89166801|gb|CI104087.1|CI104087
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89180345|gb|CI044624.1|CI044624
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89181096|gb|CI045179.1|CI045179
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88260323|gb|CI362616.1|CI362616
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88989284|gb|CI043783.1|CI043783
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86885984|gb|CI319832.1|CI319832
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86523041|gb|CI163247.1|CI163247
EST:     AAGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89195981|gb|CI395399.1|CI395399
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29618781|gb|CB623793.1|CB623793
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|51946022|gb|CV152363.1|CV152363
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86885865|gb|CI295888.1|CI295888
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88842555|gb|CI081811.1|CI081811
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15008417|gb|AU222805.1|AU222805
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88267167|gb|CI379102.1|CI379102
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCA-GATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29614792|gb|CB619805.1|CB619805
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88840707|gb|CI080161.1|CI080161
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29664694|gb|CB660969.1|CB660969
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89162476|gb|CI099168.1|CI099168
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86822251|gb|CI357866.1|CI357866
EST:     TTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: TTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|87024221|gb|CI256962.1|CI256962
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88460347|gb|CI529422.1|CI529422
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|3759828|gb|C97086.1|C97086
EST:     AGGA-TCTTCAAAGACCGNCAGGGATTCGCAGGATGCCCTNGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|8856753|gb|AU094071.1|AU094071
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58669796|gb|CK058482.1|CK058482
EST:     GGATTCTTCCAAGACCCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: GGATTCTTCCAAGA-CCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15854490|gb|BI807286.1|BI807286
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|163927288|gb|EG710275.1|EG710275
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86861329|gb|CI328102.1|CI328102
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88983116|gb|CI020680.1|CI020680
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15855570|gb|BI808382.1|BI808382
EST:     AGGATTCTTCCAAGACCGCCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88842659|gb|CI081915.1|CI081915
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|44669605|gb|CR283039.1|CR283039
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAAACTTTTCAAGAGCCATTCTAGAATGCTT
                                atctgac  putative branch site (score: 3)
                                         tctgcttt  putative PPT
                 actttaatt  TA-rich tract