1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ctaccttttcatgaattactataataagatggacatgttgagatgttctataacatttacttgaaatctgaattttgataatgggggttttcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
species | Oryza sativa |
transcript | LOC_Os03g24460.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CGCATTAGTTAATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88542896|gb|CI472254.1|CI472254
genomic: CGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: CTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|86869013|gb|CI335580.1|CI335580
genomic: CTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|89172962|gb|CI040855.1|CI040855
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88964563|gb|CI069911.1|CI069911
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88957211|gb|CI095197.1|CI095197
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|86433061|gb|CI093404.1|CI093404
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|89166610|gb|CI103896.1|CI103896
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88263285|gb|CI367059.1|CI367059
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACAT-AACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88437450|gb|CI528809.1|CI528809
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88525458|gb|CI453913.1|CI453913
genomic: TTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: ATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88531544|gb|CI460026.1|CI460026
genomic: ATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: CATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|86889408|gb|CI317208.1|CI317208
genomic: CATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|325493657|gb|JG458181.1|JG458181
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTATTGGAACGATGGGTGAAATCACACCGEST: gi|88828489|gb|CI073359.1|CI073359
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGGAATCACACCGEST: gi|88541495|gb|CI470767.1|CI470767
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|86483123|gb|CI125756.1|CI125756
genomic: TGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88278792|gb|CI397596.1|CI397596
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: CGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88958377|gb|CI095895.1|CI095895
genomic: CGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|88548475|gb|CI476851.1|CI476851
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|86426440|gb|CI071537.1|CI071537
genomic: TTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|29621730|gb|CB626741.1|CB626741
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCGEST: gi|89187323|gb|CI047390.1|CI047390
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
EST: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG GTATGGACTACTGGAACGATGGGTGAAATCACACCG
genomic: TGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGgttccagtct ... tcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
ttctataacatttacttgaaatctgaattttgataatgggggttttcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
ttttcacct CT-rich tract
tgaattttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaccttttcatgaattactataataagatggacatgttgagatgttctataacatttacttgaaatctgaattttgataatgggggttttcacctgcagGTATGGACTACTGGAACGATGGGTGAAATCACACCG
- - - tttcatg
- - - - - - - - - - - - - - - - -catgttg