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...ctttattggcaactttaccaaattttggtaaggttgaaaatggcatcaaagtgaacaggcccatagtgtcggtcttaaactttggtgtgaaatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCATTGTGGATCCATACTCCCTCACCTCGTTTGATCTCCTCCTGGACACCA
species | Oryza sativa |
transcript | LOC_Os03g20420.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AACATCTGGTT-GCTCGCGGGATGAGAACTCTTTCCAACAGCCTGACAAG GT-GTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGCAGATGGGTGTCEST: gi|55411122|gb|CV723498.1|CV723498
genomic: TACATCTGGTTGGCT-GCGGGATGAGAACTCTTTCCAACAGCCTGACAAGgtttgctaca ... aatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
EST: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAG GTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCEST: gi|86437525|gb|CI119247.1|CI119247
genomic: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAGgtttgctaca ... aatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
EST: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAG GTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCEST: gi|29680538|gb|CB676813.1|CB676813
genomic: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAGgtttgctaca ... aatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
EST: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAG GTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCEST: gi|86528047|gb|CI168253.1|CI168253
genomic: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAGgtttgctaca ... aatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
EST: CAGCCTGACAAG GTGGTTCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCEST: gi|29645169|gb|CB650176.1|CB650176
genomic: CAGCCTGACAAGgtttgctaca ... aatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
EST: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAG GTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCEST: gi|29676177|gb|CB672452.1|CB672452
genomic: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAGgtttgctaca ... aatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
EST: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAG GTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
genomic: TTACATCTGGTTGGCTGCGGGATGAGAACTCTTTCCAACAGCCTGACAAGgtttgctaca ... aatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTC
tcaaagtgaacaggcccatagtgtcggtcttaaactttggtgtgaaatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCATTGTGGATCCATACTCCCTCACCTCGTTTGATCTCCTCCTGGACACCA
ttaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttattggcaactttaccaaattttggtaaggttgaaaatggcatcaaagtgaacaggcccatagtgtcggtcttaaactttggtgtgaaatgctacagGTGGTGCCGGCGGCAAGCCCCATAACCAACGCGGGCGAGAAGATGGGTGTCATTGTGGATCCATACTCCCTCACCTCGTTTGATCTCCTCCTGGACACCA
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