1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...aaatgacatattactgatgtttcttgttggtttttaacattcaactttctaacactgtctttgcatggtgacacttcgtttactcgggattcttttgtagTTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCAGGATGCACCTAACAGGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGG
species | Oryza sativa |
transcript | LOC_Os03g17540.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAG TTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCAEST: gi|88305777|gb|CI633347.1|CI633347
genomic: AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAGgtatgtttaa ... tcttttgtagTTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCA
EST: AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAG TTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCA
genomic: AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAGgtatgtttaa ... tcttttgtagTTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCA
tttctaacactgtctttgcatggtgacacttcgtttactcgggattcttttgtagTTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCAGGATGCACCTAACAGGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGG
ttctaac putative branch site (score: 11)
ttcttttgt putative PPT
attctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgacatattactgatgtttcttgttggtttttaacattcaactttctaacactgtctttgcatggtgacacttcgtttactcgggattcttttgtagTTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCAGGATGCACCTAACAGGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - -ctgatgt
- - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggt