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gtaagaactaagaagcctccctctccgcctcctctccttttctccctatctatgtagccgctatctggagctcatttttatgtgccttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCAC
species | Oryza sativa |
transcript | LOC_Os03g14690.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|87016370|gb|CI271781.1|CI271781
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|86477516|gb|CI120149.1|CI120149
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|29687308|gb|CB683583.1|CB683583
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|86481987|gb|CI124620.1|CI124620
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|86481064|gb|CI123697.1|CI123697
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: AAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|86858351|gb|CI271192.1|CI271192
genomic: AAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|66916184|gb|CX103032.1|CX103032
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCEST: gi|86827665|gb|CI272929.1|CI272929
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
EST: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGG GTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
genomic: TCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGgtaagaacta ... cttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGC
tctccctatctatgtagccgctatctggagctcatttttatgtgccttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCAC
tgccttctt CT-rich tract
tcatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaactaagaagcctccctctccgcctcctctccttttctccctatctatgtagccgctatctggagctcatttttatgtgccttcttgtagGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA