1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gttagtgtctctaaacgttatatgctgaggttttaaatgctaattatgttgcttaaagtgtgaatttcatgttgcagCTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAATGGATGAAGAAGATAAGAGGTGTCATTCAAAGCAAAGGGGGTTCTGTGAA
species | Oryza sativa |
transcript | LOC_Os02g50550.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTATTTAAGATTACTAACAGAGTTGCCTACAAAACTGTGCTGAAAT CTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAATEST: gi|88328674|gb|CI678471.1|CI678471
genomic: TCTTGTATTTAAGATTACTAACAGAGTTGCCTACAAAACTGTGCTGAAATgttagtgtct ... catgttgcagCTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAAT
EST: TCTTGTATTTAAGATTACTAACAGAGTTGCCTACAAAACTGTGCTGAAAT CTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAATEST: gi|88328599|gb|CI678394.1|CI678394
genomic: TCTTGTATTTAAGATTACTAACAGAGTTGCCTACAAAACTGTGCTGAAATgttagtgtct ... catgttgcagCTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAAT
EST: TCTTGTATTTAAGATTACTAACAGAGTCGCCTACAAAACTGTGCTGAAAT CTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAATEST: gi|88590424|gb|CI709276.1|CI709276
genomic: TCTTGTATTTAAGATTACTAACAGAGTTGCCTACAAAACTGTGCTGAAATgttagtgtct ... catgttgcagCTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAAT
EST: TCTTGTATTTAAGATTACTAACAGAGTTGCCTACAAAACTGTGCTGAAAT CTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAAT
genomic: TCTTGTATTTAAGATTACTAACAGAGTTGCCTACAAAACTGTGCTGAAATgttagtgtct ... catgttgcagCTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAAT
tgctgaggttttaaatgctaattatgttgcttaaagtgtgaatttcatgttgcagCTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAATGGATGAAGAAGATAAGAGGTGTCATTCAAAGCAAAGGGGGTTCTGTGAA
tgctaat putative branch site (score: 12)
ttttaaatgctaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtctctaaacgttatatgctgaggttttaaatgctaattatgttgcttaaagtgtgaatttcatgttgcagCTCATAGTGCTGTTATACTGAAGGCCGAGACTATTGCTGACAAGGTTGAATGGATGAAGAAGATAAGAGGTGTCATTCAAAGCAAAGGGGGTTCTGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG