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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctattatagcttaaaagtcatttcaatcggtgcatgcatttggaaaccatagaaggtatgcatatttatgtctgaaacataattctgaatgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTGCAGGAAAGGATTTTGGAAGGATTTTCTAGTATGGATCTGGAGGAATGCC

Basic information

species Oryza sativa
transcript LOC_Os02g47410.3
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86437401|gb|CI119123.1|CI119123
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88227100|gb|CI228580.1|CI228580
EST:     TGGCATGGCAGAACCTCCACCTGTTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88269951|gb|CI381249.1|CI381249
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86822262|gb|CI357873.1|CI357873
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCC-TTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88840792|gb|CI080246.1|CI080246
EST:     TGGCATGGCAGGACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88269516|gb|CI380814.1|CI380814
EST:     CATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: CATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88542002|gb|CI471309.1|CI471309
EST:     TGGCATGCCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88286746|gb|CI517857.1|CI517857
EST:     CTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCTTCTTCCTTTG
genomic: CTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86873484|gb|CI329862.1|CI329862
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88480168|gb|CI417439.1|CI417439
EST:     TGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTCCCGTCTTCCTTTG
genomic: TGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88269232|gb|CI380530.1|CI380530
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTC
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88481734|gb|CI419005.1|CI419005
EST:     TACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88460175|gb|CI527040.1|CI527040
EST:     GGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: GGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88832781|gb|CI369671.1|CI369671
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86873757|gb|CI341190.1|CI341190
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTTCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88906147|gb|CI375219.1|CI375219
EST:     CTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: CTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|87039717|gb|CI194339.1|CI194339
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88271692|gb|CI387745.1|CI387745
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86855818|gb|CI271037.1|CI271037
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88448988|gb|CI558060.1|CI558060
EST:     GACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: GACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88273138|gb|CI388594.1|CI388594
EST:     TGGCATGCCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88289611|gb|CI522744.1|CI522744
EST:     ATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: ATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86911534|gb|CI317685.1|CI317685
EST:     ACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTCCCGTCTTCCTTTG
genomic: ACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86861405|gb|CI328137.1|CI328137
EST:     TGGCATGGCAGAACCTCCACCTCCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCCGACTCCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86477435|gb|CI120068.1|CI120068
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86869339|gb|CI339063.1|CI339063
EST:     CCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: CCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88509497|gb|CI437003.1|CI437003
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88254877|gb|CI351505.1|CI351505
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATAGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCCTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88259923|gb|CI363133.1|CI363133
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATAGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86899821|gb|CI327601.1|CI327601
EST:     GGCATGGCAGAACCTCCACCTGCTAACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: GGCATGGCAGAACCTCCACCTGCT-ACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88531426|gb|CI459901.1|CI459901
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|87038519|gb|CI193141.1|CI193141
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88838775|gb|CI376313.1|CI376313
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88376106|gb|CI530610.1|CI530610
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGGATCCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88974564|gb|CI022105.1|CI022105
EST:     AATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: AATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88477852|gb|CI415123.1|CI415123
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88411634|gb|CI521357.1|CI521357
EST:     ATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: ATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88381010|gb|CI523581.1|CI523581
EST:     TGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTCCCGTCTTCCTTTG
genomic: TGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88436268|gb|CI519187.1|CI519187
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88227087|gb|CI228567.1|CI228567
EST:     GGCATTGGCAGAACCTCCACCTGTTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: GGCA-TGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88478648|gb|CI415919.1|CI415919
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTC
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|29638403|gb|CB643412.1|CB643412
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88978529|gb|CI384904.1|CI384904
EST:     GGCATGGCAAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: GGCATGGC-AGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86520913|gb|CI161119.1|CI161119
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88274247|gb|CI394653.1|CI394653
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88233875|gb|CI233724.1|CI233724
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|87041686|gb|CI196308.1|CI196308
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88281834|gb|CI403230.1|CI403230
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTCCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88904060|gb|CI006293.1|CI006293
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88834528|gb|CI077811.1|CI077811
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86895730|gb|CI315997.1|CI315997
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGG-ATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCACGCCGGACTGCCGTCTTCCTTT
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCA-GGCGGACTGCCGTCTTCCTTT
EST: gi|87040692|gb|CI195314.1|CI195314
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88485173|gb|CI422444.1|CI422444
EST:     GCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: GCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88198567|gb|CI198417.1|CI198417
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|58601341|gb|CK011869.1|CK011869
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88291903|gb|CI532495.1|CI532495
EST:     CTCCACCTGCTACTATGGCTGACGGAATGCCTT-GG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: CTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88847033|gb|CI001305.1|CI001305
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86870779|gb|CI323823.1|CI323823
EST:     TGGCATGGCAGAACCTCCACCTGCTACTAT-GCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCACGCCGGACTGCCGTCTTCCTTT
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCA-GGCGGACTGCCGTCTTCCTTT
EST: gi|88292151|gb|CI534945.1|CI534945
EST:     CGGAATGCCTTGGG                         GAGGAAGGCCT-GTCCACTCTTTTACAGCAGGCGGACTCCCGTCTTCCTTT
genomic: CGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGT-CACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTT
EST: gi|88543213|gb|CI473203.1|CI473203
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTCCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88227068|gb|CI228548.1|CI228548
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88457112|gb|CI531711.1|CI531711
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTCCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86866027|gb|CI336783.1|CI336783
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|87016346|gb|CI271757.1|CI271757
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88440592|gb|CI552058.1|CI552058
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATCCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|29622303|gb|CB627314.1|CB627314
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|87040709|gb|CI195331.1|CI195331
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88906201|gb|CI375273.1|CI375273
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88320898|gb|CI528050.1|CI528050
EST:     GGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: GGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88268650|gb|CI378585.1|CI378585
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCATTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88263456|gb|CI367230.1|CI367230
EST:     T-GCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACACCAGGCGGACTCCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88842161|gb|CI081417.1|CI081417
EST:     TGGCATGGCAGAACCTCCACCTGGTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88276224|gb|CI396828.1|CI396828
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGCAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88229025|gb|CI228901.1|CI228901
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88283597|gb|CI405043.1|CI405043
EST:     CATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: CATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88259220|gb|CI363513.1|CI363513
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|86480866|gb|CI123499.1|CI123499
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTTCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88439650|gb|CI551884.1|CI551884
EST:     CACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: CACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88488539|gb|CI425810.1|CI425810
EST:     TGGCATGGCAGAACCTCCACCTGGTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|87018950|gb|CI256835.1|CI256835
EST:     TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGG                         GAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: TGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
EST: gi|88474628|gb|CI411899.1|CI411899
EST:     CTGCTACTATGGCTNACGGAATGCCTTGGG                         GAGGAAGGCGTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG
genomic: CTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 14

CTACGTCCAATGGGGAATCATCACAATGGTCAGCCTGTATGGCCTAATTATGGCATGGCAGAACCTCCACCTGCTACTATGGCTGACGGAATGCCTTGGGgtaatatttc ... tgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTGCAGGAAAGGATTTTGGAAGGATTTTCTAGTATGGATCTGGAGGAATGCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccatagaaggtatgcatatttatgtctgaaacataattctgaatgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTGCAGGAAAGGATTTTGGAAGGATTTTCTAGTATGGATCTGGAGGAATGCC
                 atatttatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctattatagcttaaaagtcatttcaatcggtgcatgcatttggaaaccatagaaggtatgcatatttatgtctgaaacataattctgaatgttgtgcagGAGGAAGGCCTGGTCACTCTTTTACAGCAGGCGGACTGCCGTCTTCCTTTGCAGGAAAGGATTTTGGAAGGATTTTCTAGTATGGATCTGGAGGAATGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA