1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaattttcttcatttgtgcacaactgcatattcagttggtactgtttttccacatatttaacatctctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG
species | Oryza sativa |
transcript | LOC_Os02g45070.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GCATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGAEST: gi|218479705|gb|FG950878.1|FG950878
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCNTGAEST: gi|58673688|gb|CK062374.1|CK062374
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGAEST: gi|14571449|gb|BI118817.1|BI118817
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGAEST: gi|38469760|gb|CF953891.1|CF953891
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGAEST: gi|58674483|gb|CK063170.1|CK063170
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGAEST: gi|58681274|gb|CK069961.1|CK069961
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGAEST: gi|14571456|gb|BI118824.1|BI118824
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAAGTTTTATCAGGTTCTGTTTTATGAGCTTGEST: gi|58599567|gb|CK010095.1|CK010095
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGAC-AGTTTTATCAGGTTCTGTTTTATGAGCTTG
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGAEST: gi|11544371|gb|BF475189.1|BF475189
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
EST: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAG GGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
genomic: TCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGgtaattttct ... ctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGA
aactgcatattcagttggtactgtttttccacatatttaacatctctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG
atttaac putative branch site (score: 3)
tctctcatttc CT-rich tract
atatttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcttcatttgtgcacaactgcatattcagttggtactgtttttccacatatttaacatctctcatttcagGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT