1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaagaagcaagcaccgtcccagataacaaaagctaagcaactccattctccttatggtccactttataaatgctgttctaacttgttttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCAAAATACGGCATGGACGAGTACCTGGAG
species | Oryza sativa |
transcript | LOC_Os02g07760.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAG GTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCAEST: gi|218485663|gb|FG949794.1|FG949794
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
EST: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCGTCTCAACAGAG GTTGCGCCATTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCAEST: gi|88227449|gb|CI226929.1|CI226929
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
EST: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAG GTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCAEST: gi|218498992|gb|FG968229.1|FG968229
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
EST: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCGTCTCAACAGAG GTTGCGCCATTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
ccattctccttatggtccactttataaatgctgttctaacttgttttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCAAAATACGGCATGGACGAGTACCTGGAG
ttctaac putative branch site (score: 1)
cttgttttttcttc CT-rich tract
actttataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagcaagcaccgtcccagataacaaaagctaagcaactccattctccttatggtccactttataaatgctgttctaacttgttttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCAAAATACGGCATGGACGAGTACCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA