1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtttgtgttagtcactgctatgcacttcatttctgccattttgtatcaaatgtttgacacgaggttttttgtgtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCTGGTTGGCAATCATATGTTATATTTGCGCAAAAAGGCAAATATTTTCAAT
species | Oryza sativa |
transcript | LOC_Os02g02750.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCTEST: gi|157650165|gb|EX449799.1|EX449799
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: ACATCTGTTA-CCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCTEST: gi|88691614|gb|CI733692.1|CI733692
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG GATCACTAGGAAEST: gi|86594261|gb|CI251133.1|CI251133
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAA
EST: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCTEST: gi|33803552|gb|CF327651.1|CF327651
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCTEST: gi|89173678|gb|CI041571.1|CI041571
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
catttctgccattttgtatcaaatgtttgacacgaggttttttgtgtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCTGGTTGGCAATCATATGTTATATTTGCGCAAAAAGGCAAATATTTTCAAT
gtttgac putative branch site (score: 4)
attttgtatcaaat TA-rich tract