1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatagttccttccaacattatttcctcatgcaaaagctttaatttagttcatgagttcaaatgaaattaactgatccttcttcgcgtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACAT
species | Oryza sativa |
transcript | LOC_Os02g02560.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|86595013|gb|CI258267.1|CI258267
genomic: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|7332555|gb|AU085901.1|AU085901
genomic: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|86839753|gb|CI343676.1|CI343676
genomic: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: CTCAATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|88260254|gb|CI362547.1|CI362547
genomic: CTCAATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: GTCCAGAGTTCAAGAAG ATCGGGTGTTTCCTTGGTCGCTTCAACTCAATCCCCAGCATTGCTGAGCTTEST: gi|86479595|gb|CI122228.1|CI122228
genomic: GTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|88256960|gb|CI359348.1|CI359348
genomic: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: GGTCCAGAGTTCAAGAAG TTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|86859745|gb|CI345407.1|CI345407
genomic: GGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: ATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|66922584|gb|CX109432.1|CX109432
genomic: ATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: ATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|86841180|gb|CI342925.1|CI342925
genomic: ATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: CTCAATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTEST: gi|86823815|gb|CI258831.1|CI258831
genomic: CTCAATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
EST: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
genomic: GAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAGgtatagttcc ... gtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTT
aatttagttcatgagttcaaatgaaattaactgatccttcttcgcgtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACAT
ttcaaatgaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagttccttccaacattatttcctcatgcaaaagctttaatttagttcatgagttcaaatgaaattaactgatccttcttcgcgtaatggcagGTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTGAAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG