1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaacgaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGTACTTGCTGCCGCCGGCGAGATACGCCTTCT
species | Oryza sativa |
transcript | LOC_Os01g72340.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88907247|gb|CI090041.1|CI090041
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86260581|gb|CI066454.1|CI066454
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88970138|gb|CI383640.1|CI383640
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86478567|gb|CI121200.1|CI121200
genomic: CCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86434481|gb|CI094824.1|CI094824
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|87027586|gb|CI272351.1|CI272351
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: GCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGTTCGEST: gi|87030204|gb|CI270214.1|CI270214
genomic: GCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86864205|gb|CI334031.1|CI334031
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCTTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|24208447|gb|AU225474.1|AU225474
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88828187|gb|CI000296.1|CI000296
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCGCAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|29622529|gb|CB627540.1|CB627540
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|87034572|gb|CI189196.1|CI189196
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88234074|gb|CI233923.1|CI233923
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86433478|gb|CI093821.1|CI093821
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86425442|gb|CI070539.1|CI070539
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88234480|gb|CI234329.1|CI234329
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88236897|gb|CI234674.1|CI234674
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86514464|gb|CI157097.1|CI157097
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTG- ---CATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|87031833|gb|CI272534.1|CI272534
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88852371|gb|CI374139.1|CI374139
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCCEST: gi|87040070|gb|CI193279.1|CI193279
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88236249|gb|CI235451.1|CI235451
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGTTCGEST: gi|86518440|gb|CI158646.1|CI158646
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86479513|gb|CI122146.1|CI122146
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88966597|gb|CI353148.1|CI353148
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86827943|gb|CI274871.1|CI274871
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGG GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86543127|gb|CI183333.1|CI183333
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86479302|gb|CI121935.1|CI121935
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88539750|gb|CI469735.1|CI469735
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86481309|gb|CI123942.1|CI123942
genomic: CGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86823634|gb|CI258702.1|CI258702
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCCEST: gi|86526945|gb|CI167151.1|CI167151
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCTCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|38479961|gb|CF964050.1|CF964050
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTG- ---CATCTTGATCACAAGCACATGGGGCTGGGAGGGGAEST: gi|88232922|gb|CI232166.1|CI232166
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGA
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|29677248|gb|CB673523.1|CB673523
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88201658|gb|CI202013.1|CI202013
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86827256|gb|CI270925.1|CI270925
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86597178|gb|CI272773.1|CI272773
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|87016583|gb|CI275585.1|CI275585
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86518015|gb|CI158221.1|CI158221
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86523443|gb|CI163649.1|CI163649
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88201594|gb|CI201949.1|CI201949
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|87027578|gb|CI272343.1|CI272343
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|87021153|gb|CI271960.1|CI271960
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86544766|gb|CI184972.1|CI184972
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86477729|gb|CI120362.1|CI120362
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86480840|gb|CI123473.1|CI123473
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88472614|gb|CI409885.1|CI409885
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86827881|gb|CI274827.1|CI274827
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86422520|gb|CI060093.1|CI060093
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|88473809|gb|CI411080.1|CI411080
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|29621653|gb|CB626664.1|CB626664
genomic: CGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTG- ---CATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86434874|gb|CI106107.1|CI106107
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCCEST: gi|88247549|gb|CI247398.1|CI247398
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|86507661|gb|CI150294.1|CI150294
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGEST: gi|87031726|gb|CI272427.1|CI272427
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
acttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGTACTTGCTGCCGCCGGCGAGATACGCCTTCT
ttttgat putative branch site (score: 4)
atgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaacgaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGTACTTGCTGCCGCCGGCGAGATACGCCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
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