1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...agtggcagggaagctgaccagaaatcctaattatccatgtctgtaaatttcctcttggggttgctgttgcatgttctttaaggatttgtttcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTATAG
species | Oryza sativa |
transcript | LOC_Os01g69130.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTG GTTAACCACACAAAACGGGGGCTGCATAATTACCTTATAACTAAGCTTTATEST: gi|88200886|gb|CI198738.1|CI198738
genomic: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTGgtccgtgatc ... tcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTAT
EST: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTG GTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTATEST: gi|25806989|gb|CA762950.1|CA762950
genomic: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTGgtccgtgatc ... tcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTAT
EST: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATNTTCTG GTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTATEST: gi|29625093|gb|CB630104.1|CB630104
genomic: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTGgtccgtgatc ... tcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTAT
EST: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTG GTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTATEST: gi|58683601|gb|CK072288.1|CK072288
genomic: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTGgtccgtgatc ... tcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTAT
EST: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTG GTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTAT
genomic: TGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTGgtccgtgatc ... tcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTAT
aatttcctcttggggttgctgttgcatgttctttaaggatttgtttcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTATAG
tttgtttc CT-rich tract
ttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtggcagggaagctgaccagaaatcctaattatccatgtctgtaaatttcctcttggggttgctgttgcatgttctttaaggatttgtttcgcttgcagGTTAACCACACAAAACGGGAGCTGCATAATTACCTTATAACTAAGCTTTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC