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gtaaaccatttttctaacatcatttcacttgtgaaacggcatagagcatatgccacatgatagttcagtagaattgccttgaaatggcttcactgaaagtaaaattggatgttgaacctgttcagtaactgttttgcgccatgcagGATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAATGCACCAGTCCCCTTCGAGTCCGCAGATGTTGCCATGTGCAGTGGTAGC
species | Oryza sativa |
transcript | LOC_Os01g50690.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTCAAATTTCTTAGAACGAGGATCAATGATCTAGGAGACAG GATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTTGCACTTACTGCAEST: gi|86495557|gb|CI138190.1|CI138190
genomic: CTCAAATTTCTTAGAACGAGGATCAATGATCTAGGAGACAGgtaaaccatt ... cgccatgcagGATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATAC-TGCACCTACTGCA
EST: AGGGATGAGCTCAAATTTCTTAGAACGAGGATCAATGATCTAGGAGACAG GATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAAEST: gi|33681183|gb|CF309422.1|CF309422
genomic: AGGGATGAGCTCAAATTTCTTAGAACGAGGATCAATGATCTAGGAGACAGgtaaaccatt ... cgccatgcagGATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAA
EST: AGGGATGAGCTCAAATTTCTTAGAACGAGGATCAATGATCTAGGAGACAG GATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAAEST: gi|218487231|gb|FG968030.1|FG968030
genomic: AGGGATGAGCTCAAATTTCTTAGAACGAGGATCAATGATCTAGGAGACAGgtaaaccatt ... cgccatgcagGATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAA
EST: AGGGATGAGCTCAAATTTCTTAAAACGAGGATCAATGATCTATGAGACAG GATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAAEST: gi|86505110|gb|CI147743.1|CI147743
genomic: AGGGATGAGCTCAAATTTCTTAGAACGAGGATCAATGATCTAGGAGACAGgtaaaccatt ... cgccatgcagGATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAA
EST: TCTTAGAACGAGGATCAATGATCTAGGAGACAG GATCAACTCAGTGGTCCGAGTACTCAGTTGAAGAATACTGCACCTACTGCA
genomic: TCTTAGAACGAGGATCAATGATCTAGGAGACAGgtaaaccatt ... cgccatgcagGATCAACTCAGT-GTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCA
actgaaagtaaaattggatgttgaacctgttcagtaactgttttgcgccatgcagGATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAATGCACCAGTCCCCTTCGAGTCCGCAGATGTTGCCATGTGCAGTGGTAGC
cagtaac putative branch site (score: 8)
aagtaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccatttttctaacatcatttcacttgtgaaacggcatagagcatatgccacatgatagttcagtagaattgccttgaaatggcttcactgaaagtaaaattggatgttgaacctgttcagtaactgttttgcgccatgcagGATCAACTCAGTGTGCGAGTACTCAGTTGAAGAATACTGCACCTACTGCAATGCACCAGTCCCCTTCGAGTCCGCAGATGTTGCCATGTGCAGTGGTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG