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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatatacataactaaacattagcttgaacatgttatgattcatgaacaactctaagctgttgcttctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGATGAGCTGATTTGTTTACATTTCTCAAGT

Basic information

species Oryza sativa
transcript LOC_Os01g36930.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36930.1 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G017086_T01 (Zea mays), 3'ss of exon 17
gtgagtaatatacataactaaacattagcttgaacatgttatgattcatgaacaactctaa-----gctgttgcttctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGATGAGCTGATTTGTTTACATTTCTCAAGT---
||||| ||    |     || || | |  |  || ||  ||||  |||||||| | | |||      |   || || |||| ||||| ||||||||||||||||| || ||||| |||||||| ||  |   | || ||| |  |  || | ||    ||     |  | | |      |  | |    
gtgagcaaccgtc----ttacacgtcaaatgaaatat--tatg--tcatgaacgattttaacgcagaccagtgtttgtctatacagGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGG-CGGAGTTGAAGAGTTAGGCCGG--AGTGGTTCTACATTTCTGTGCCGCGAACGCAAC

upper sequence: LOC_Os01g36930.1 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G017086_T03 (Zea mays), 3'ss of exon 17
gtgagtaatatacataactaaacattagcttgaacatgttatgattcatgaacaactctaa-----gctgttgcttctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGATGAGCTGATTTGTTTACATTTCTCAAGT
||||| ||    |     || || | |  |  || ||  ||||  |||||||| | | |||      |   || || |||| ||||| ||||||||||||||||| || ||||| |||||||| ||  |   | || ||| |  |  || | ||         || ||    |||||||||     
gtgagcaaccgtc----ttacacgtcaaatgaaatat--tatg--tcatgaacgattttaacgcagaccagTGTTTGTCTATACAGGTGACTGGCACATGGCTTATATCTGCCTATACAAAGCCCGCATGG-CGGAGTTGAAGAGTTAGGCCGG-------AGTGGTT---CTACATTTCTG----

upper sequence: LOC_Os01g36930.1 (Oryza sativa), 3'ss of exon 17
lower sequence: Vv09s0002g02500.t01 (Vitis vinifera), 3'ss of exon 17
----------gtgagtaatatacata---actaaacattagcttgaacatgttatg-attcatgaac--aactctaagctgttgcttctctaaa---cagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGATGAGCTGATTTGTTTACATTTCTCAAGT--
          ||     || | |||     ||  || | |    ||        || |||  | |    || | |||  | ||| |||| |      ||||||||||||| ||||| ||||||||| ||||||| || ||    |||   || | ||| |        || || |  | | ||       | | |  | |  
tgtttgctgagttctccatgtccatccccgcttgacctcattcagagttctacctgcatttcttattttaaatttaacttcttggttctttttgtttcagGCGACTGGCATATGGCATACATTTGCATGTACAAGGCCCGCACCATCCCCAT-GTAAT-CTCTCTGATCTCATAAATTTAGTTTGAAGTGTCTATTGATTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88906291|gb|CI375363.1|CI375363
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|66917019|gb|CX103867.1|CX103867
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|86873220|gb|CI328600.1|CI328600
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88484191|gb|CI421462.1|CI421462
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|89196124|gb|CI395542.1|CI395542
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|33803665|gb|CF327708.1|CF327708
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88544583|gb|CI472695.1|CI472695
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGCGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88438668|gb|CI543772.1|CI543772
EST:     ATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: ATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88901805|gb|CI374413.1|CI374413
EST:     CAACCCTAGCATACGCAAGGAGG-AGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|86251819|gb|CI019011.1|CI019011
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88253087|gb|CI351713.1|CI351713
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88841750|gb|CI081006.1|CI081006
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|86895686|gb|CI315973.1|CI315973
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88842004|gb|CI081260.1|CI081260
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTNATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|11172378|gb|AU164255.1|AU164255
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|29615419|gb|CB620431.1|CB620431
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|22306033|gb|BQ907255.1|BQ907255
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAA-GCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88259760|gb|CI364053.1|CI364053
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88416891|gb|CI546170.1|CI546170
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|58694158|gb|CK082845.1|CK082845
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACCAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88481251|gb|CI418522.1|CI418522
EST:     CAACCGTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGNAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88264896|gb|CI367547.1|CI367547
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88835245|gb|CI370548.1|CI370548
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|29646292|gb|CB651299.1|CB651299
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88483824|gb|CI421095.1|CI421095
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88970083|gb|CI383585.1|CI383585
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|5002870|gb|AU067979.1|AU067979
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|8527359|gb|AU092174.1|AU092174
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|86870576|gb|CI320672.1|CI320672
EST:     CAACCCTAGCATACCCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88515296|gb|CI442950.1|CI442950
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|29674106|gb|CB670381.1|CB670381
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88971857|gb|CI390449.1|CI390449
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|29679501|gb|CB675776.1|CB675776
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88455606|gb|CI521826.1|CI521826
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88959994|gb|CI381872.1|CI381872
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAATTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTTTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88375659|gb|CI525753.1|CI525753
EST:     TAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: TAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88289462|gb|CI555824.1|CI555824
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|3766829|gb|AU030939.1|AU030939
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|29667425|gb|CB663700.1|CB663700
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|86896861|gb|CI317365.1|CI317365
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88479264|gb|CI416535.1|CI416535
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|86429804|gb|CI082227.1|CI082227
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|27920955|gb|CB096763.1|CB096763
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|24208654|gb|AU225681.1|AU225681
EST:     AACCCTAGCATACGCAAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: AACCCTAGCATACGC-AAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88465451|gb|CI532069.1|CI532069
EST:     ACCCTAGCATACNCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: ACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88970237|gb|CI383739.1|CI383739
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88831197|gb|CI082007.1|CI082007
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|29615344|gb|CB620356.1|CB620356
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATTTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|86864564|gb|CI344162.1|CI344162
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|88846680|gb|CI373448.1|CI373448
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
EST: gi|29689096|gb|CB685371.1|CB685371
EST:     CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAG                         GCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA
genomic: CAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 62 (downstream exon)
Score: 20

GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATCTGGTGGAGgtgagtaata ... ctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGATGAGCTGATTTGTTTACATTTCTCAAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgaacatgttatgattcatgaacaactctaagctgttgcttctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGATGAGCTGATTTGTTTACATTTCTCAAGT
                                       ttgcttctct  CT-rich tract
            ttatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtaatatacataactaaacattagcttgaacatgttatgattcatgaacaactctaagctgttgcttctctaaacagGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGATGAGCTGATTTGTTTACATTTCTCAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT