1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ctgttcttctatgtaatagaagttcaaatacttaccataatgacaaagctgcaaattctgcttgcatattttgttgtttaacttgcattttttttctcagATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG
species | Oryza sativa |
transcript | LOC_Os01g36840.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116874995|gb|EC365503.1|EC365503
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875003|gb|EC365511.1|EC365511
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA GEST: gi|116875534|gb|EC366042.1|EC366042
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
EST: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGACAA G
genomic: CAACGGAGACGGTTTAACGAATACAGGACTTTGACACTAGAGAATGATAAgttgcgtggc ... tttttctcag-
aagctgcaaattctgcttgcatattttgttgtttaacttgcattttttttctcagATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG
gtttaac putative branch site (score: 3)
cttgcattttttttct CT-rich tract
atattttgttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttcttctatgtaatagaagttcaaatacttaccataatgacaaagctgcaaattctgcttgcatattttgttgtttaacttgcattttttttctcagATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-tgttctt
- - - - - - - aatagaag
- - - - - - - - - - - - caaatac
- - - - - - - - - - - - - - - - -accataa
- - - - - - - - - - - - - - - - - - - - - - - agctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgca