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...tggaaatgaaaataacaagttaaatgagctactgtataggaactaaaagatgcaatccttctttgccataacactgaacttccttttttccatatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCCTTATTCTAAGCAACATTGATAGGCTCTGGAAGGAACACTTGCAGGCAT
species | Oryza sativa |
transcript | LOC_Os01g21820.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCEST: gi|218484584|gb|FG955879.1|FG955879
genomic: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
EST: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCEST: gi|29676134|gb|CB672409.1|CB672409
genomic: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
EST: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCEST: gi|29615684|gb|CB620696.1|CB620696
genomic: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
EST: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCEST: gi|29676704|gb|CB672979.1|CB672979
genomic: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
EST: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCEST: gi|27577941|gb|CB000636.1|CB000636
genomic: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
EST: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCEST: gi|84117117|gb|CD150884.1|CD150884
genomic: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
EST: GTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCEST: gi|58593464|gb|CF991772.1|CF991772
genomic: GTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
EST: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCT GAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
genomic: TGCAAGAGTACCTTCGTACCCGAGGACGTGAAGCATACTACCAAAAAGCTgttagttgtt ... catatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTC
aaagatgcaatccttctttgccataacactgaacttccttttttccatatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCCTTATTCTAAGCAACATTGATAGGCTCTGGAAGGAACACTTGCAGGCAT
cttccttttttccata CT-rich tract
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaatgaaaataacaagttaaatgagctactgtataggaactaaaagatgcaatccttctttgccataacactgaacttccttttttccatatggcagGAGATTGTGGAGAAACAAGCTCCAGGCTTGATGAAAGAAGCTGAGAGGTTCCTTATTCTAAGCAACATTGATAGGCTCTGGAAGGAACACTTGCAGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - aaaataa
- - - - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccata