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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaaaactattttgacctcttgcagGTCCCAATTTAGGCAAGGATTTGCTCACCGGAAGGAGAAAATCGGCCACACAACCATTGACCTGGGTGTTGCTGTAGAGATAACAGAAACTCACAAGGAT

Basic information

species Oryza sativa
transcript LOC_Os01g20860.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g20860.1 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G158008_T01 (Zea mays), 3'ss of exon 9
---------------------------------------------------------------gtatttaaaactattttgacctcttgcagGTCCCAATTTAGGCAAGGATTTGCTCACCGGAAGGAGAAAATCGGCCACACAACCATTGACCTGGGTGTTGCTGTAGAGATAACAGAAACTCACAAGGAT
                                                               || | | |||  || |  |||||||||||||  |||||| | ||| | |||||||| || ||||||||||| |||||||||||||| ||| ||||||||||  |||| |     ||||| ||  |||| 
gtattgaatgcaggacctgtcttcaagttttctcccattcgagtcgaaatattgtgctcactggtctctgaaatgatatcaacctcttgcagGTATCAATTTCGCCAAAGTTTTGCTCATCGTAAGGAGAAAATTGGCCACACAACCATAGACTTGGGTGTTGCCTTAGAAAACCTGGAAACGCAACAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttaaaactattttgacctcttgcagGTCCCAATTTAGGCAAGGATTTGCTCACCGGAAGGAGAAAATCGGCCACACAACCATTGACCTGGGTGTTGCTGTAGAGATAACAGAAACTCACAAGGAT
                                       ttttgac  putative branch site (score: 3)
                                             cctcttgc  CT-rich tract
                           tatttaaaactatttt  TA-rich tract