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gtgaacttcctccaaccaaacacccttttttgtgtgattcaagttgatgattcatttaatttataccatttgcctgcataaatattgaatgacccagaaaacagttctgatattactactgatcatggataagcagGTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGGTAGTTCAACTTATACTCGATCGGGTTTTG
species | Oryza sativa |
transcript | LOC_Os11g48090.3 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TACATTGTTGCAGCTGGTTGATAAGTTCAAGGCAAAGTGGAAAGATTTAG GTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGGEST: gi|29639799|gb|CB644808.1|CB644808
genomic: TACATTGTTGCAGCTGGTTGATAAGTTCAAGGCAAAGTGGAAAGATTTAGgtgaacttcc ... ggataagcagGTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGG
EST: TACATTGTTGCAGCTGGTTGATAAGTTCAAGGCAAAGTGGAAAGATTTAG GTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGGEST: gi|29639599|gb|CB644608.1|CB644608
genomic: TACATTGTTGCAGCTGGTTGATAAGTTCAAGGCAAAGTGGAAAGATTTAGgtgaacttcc ... ggataagcagGTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGG
EST: TTGATAAGTTCAAGGCAAAGTGGAAAGATTTAG GTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGGEST: gi|29626859|gb|CB631870.1|CB631870
genomic: TTGATAAGTTCAAGGCAAAGTGGAAAGATTTAGgtgaacttcc ... ggataagcagGTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGG
EST: TGCAGCTGGTTGATAAGTTCAAGGCAAAGTGGAAAGATTTAG GTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGG
genomic: TGCAGCTGGTTGATAAGTTCAAGGCAAAGTGGAAAGATTTAGgtgaacttcc ... ggataagcagGTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGG
atattgaatgacccagaaaacagttctgatattactactgatcatggataagcagGTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGGTAGTTCAACTTATACTCGATCGGGTTTTG
tactgat putative branch site (score: 2)
atattacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacttcctccaaccaaacacccttttttgtgtgattcaagttgatgattcatttaatttataccatttgcctgcataaatattgaatgacccagaaaacagttctgatattactactgatcatggataagcagGTTGTTCAAATGAGTCCATTGATCTTAAGAAAGAAGGCATTGAACAGTTGGTAGTTCAACTTATACTCGATCGGGTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG