1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttagagagaacaaactctataaccatgatttcctggttttgttcttatgatttattttacggatgcaaacatgtgaatgaagttcttcatgacattattctggtgatctttataagactaagcatgtggataatggtagcacatttttttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGATGGTAAAACAGAACCAAGTGGTTATTGAATTTCATGATTATTCAGAAGG
species | Oryza sativa |
transcript | LOC_Os11g35400.4 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|66947112|gb|AU311956.1|AU311956
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|66947113|gb|AU311957.1|AU311957
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCNNNGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|88460370|gb|CI529445.1|CI529445
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: NGACTCCAACTTTTAAGCTCAAGAGACCCCANCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
gtgatctttataagactaagcatgtggataatggtagcacatttttttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGATGGTAAAACAGAACCAAGTGGTTATTGAATTTCATGATTATTCAGAAGG
ttttaat putative branch site (score: 3)
cattttttt CT-rich tract
acatttttttaat TA-rich tract