1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gctcaaacctatgccccttcctttctttgttttcaccaatgtaactgtagttcctcaccatttctgcaaattttaaagtatgtttcttctgcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGCTTCTTCTGCGCACCCTGGTCAAGGATGTGCTGCACTTCGAAGAAATCG
species | Oryza sativa |
transcript | LOC_Os11g29380.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|87016236|gb|CI271647.1|CI271647
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86429086|gb|CI075767.1|CI075767
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: TTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86437499|gb|CI119221.1|CI119221
genomic: TTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86482314|gb|CI124947.1|CI124947
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|88845092|gb|CI084017.1|CI084017
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: GTGTACAGAAAGCACTTCAAAAG AATTTCAGGGAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86480334|gb|CI122967.1|CI122967
genomic: GTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86437458|gb|CI119180.1|CI119180
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCGGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|87023311|gb|CI272139.1|CI272139
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG GATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|87032692|gb|CI270327.1|CI270327
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: CATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86436900|gb|CI118622.1|CI118622
genomic: CATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|88244982|gb|CI244831.1|CI244831
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86493580|gb|CI136213.1|CI136213
genomic: ATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86437708|gb|CI119628.1|CI119628
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86597015|gb|CI272610.1|CI272610
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86481049|gb|CI123682.1|CI123682
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCGCTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|87017949|gb|CI273971.1|CI273971
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|88831233|gb|CI082043.1|CI082043
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|87031839|gb|CI272540.1|CI272540
genomic: ATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|29630148|gb|CB635157.1|CB635157
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|87021134|gb|CI271941.1|CI271941
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGGGGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGEST: gi|86518590|gb|CI158796.1|CI158796
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
EST: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAG AATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
genomic: ACTCATTTATTTCAACTCAGAAGTTTGGTGTACAGAAAGCACTTCAAAAGgtaaattttg ... gcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTG
tgtagttcctcaccatttctgcaaattttaaagtatgtttcttctgcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGCTTCTTCTGCGCACCCTGGTCAAGGATGTGCTGCACTTCGAAGAAATCG
tcctcac putative branch site (score: 16)
tgtttcttctgcctct putative PPT
aaattttaaagtatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcaaacctatgccccttcctttctttgttttcaccaatgtaactgtagttcctcaccatttctgcaaattttaaagtatgtttcttctgcctctacagAATTTCAGGAAATACATGACCTATAAGAAGGATTACAATGAGCTGCTCTTGCTTCTTCTGCGCACCCTGGTCAAGGATGTGCTGCACTTCGAAGAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -tatgccc
- - - - - - - - - - - - - - - -ttcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttct