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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaattttgttctaaacctactctacatctgtaggagattgcgtacctcatgaattgatcttgaaatctcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACAT

Basic information

species Oryza sativa
transcript LOC_Os11g03730.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03730.3 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM2G077299_T03 (Zea mays), 3'ss of exon 15
gtaagaaattttgttctaaacctactctacatctgtaggagattgcgtacctcatgaattgatctt-gaaatctcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACAT
| ||| ||         |||   | |   |   || |    |    |||    ||  ||||||||  |||| ||||||||||| | |||||||| ||||| ||| | |||| ||| || |||||  ||| |||||| |||||| || | || || ||||||||||| ||||||||||||||||
gcaagcaa---------aaaaaaagttctctcatgcaccctagcctgtaatgtatctattgatctcagaaaactcctgtgcagGTCATAAACTTCGGGTCAGATGCTGTGACCCTGACAATCTCCACAAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88485297|gb|CI422568.1|CI422568
EST:     TGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: TGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86861306|gb|CI328086.1|CI328086
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCACTGAGCCTCACGATCTCTGCAACCTGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAA-CTGG
EST: gi|29665627|gb|CB661902.1|CB661902
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86833320|gb|CI334915.1|CI334915
EST:     ATTCT-AAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCACTGAGCCTCACGATCTCTGCAACTGGG
genomic: ATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86834656|gb|CI340773.1|CI340773
EST:     ATCTGCAATTACTTGGCACGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: ATCTGCAATTACTTGGCA-GGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29636384|gb|CB641393.1|CB641393
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29674665|gb|CB670940.1|CB670940
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29677794|gb|CB674069.1|CB674069
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|87021358|gb|CI295417.1|CI295417
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29627661|gb|CB632672.1|CB632672
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86836733|gb|CI347356.1|CI347356
EST:     AATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: AATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86882498|gb|CI327250.1|CI327250
EST:     CTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|88840286|gb|CI079740.1|CI079740
EST:     TCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: TCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|87008612|gb|CI315070.1|CI315070
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86862749|gb|CI331641.1|CI331641
EST:     GAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACGTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: GAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86871089|gb|CI328291.1|CI328291
EST:     CATCTGCAATTACTT-GCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|88226401|gb|CI226317.1|CI226317
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29624426|gb|CB629437.1|CB629437
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|38476158|gb|CF960291.1|CF960291
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCGGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|55439305|gb|CV732956.1|CV732956
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|88981807|gb|CI027385.1|CI027385
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|58030521|gb|CX728064.1|CX728064
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86833238|gb|CI334833.1|CI334833
EST:     GGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTCCAACTGGG
genomic: GGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|88832903|gb|CI369793.1|CI369793
EST:     TCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: TCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86418809|gb|CI053610.1|CI053610
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86901333|gb|CI326176.1|CI326176
EST:     AGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: AGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29646542|gb|CB651549.1|CB651549
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29628284|gb|CB633295.1|CB633295
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86869108|gb|CI335675.1|CI335675
EST:     CTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTAACGATCTCTGCAACTGGG
genomic: CTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86884472|gb|CI337040.1|CI337040
EST:     GGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: GGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86905528|gb|CI285491.1|CI285491
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86825583|gb|CI361756.1|CI361756
EST:     TAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: TAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29681803|gb|CB678078.1|CB678078
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29624428|gb|CB629439.1|CB629439
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29632194|gb|CB637203.1|CB637203
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29627934|gb|CB632945.1|CB632945
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86832768|gb|CI345182.1|CI345182
EST:     CTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|88267289|gb|CI379224.1|CI379224
EST:     TAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: TAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|88271401|gb|CI387454.1|CI387454
EST:     GATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: GATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|88966703|gb|CI365926.1|CI365926
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86853822|gb|CI329268.1|CI329268
EST:     TTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: TTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29644766|gb|CB649773.1|CB649773
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86862150|gb|CI330709.1|CI330709
EST:     TTCTTAAGAGTAAAG                         AGTTATAAACTTTGGGTGTGATCCAGTGAGCCTCACGATCTCTGCAACTGG
genomic: TTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagA-TTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGG
EST: gi|86851229|gb|CI312630.1|CI312630
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86852897|gb|CI323206.1|CI323206
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTT-GGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|29638132|gb|CB643141.1|CB643141
EST:     CATGTGCAATTACTTGGCAGGATTGTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAATCTTTGGGTTTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
EST: gi|86481297|gb|CI123930.1|CI123930
EST:     CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAG                         ATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG
genomic: CATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 69 (downstream exon)
Score: 76

TATGTTTCATCCAGTTACAATCACTTCCAGCTACTCTGGTTCTCTGGCAGCATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGgtaagaaatt ... tcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatctgtaggagattgcgtacctcatgaattgatcttgaaatctcctgtgcagATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACAT
                             aattgat  putative branch site (score: 76)
                                           tctcctgt  putative PPT
                          atgaatt  TA-rich tract