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...caattcttgcataagtttcccttgaaatgtttgttatgtcttatacattagagtacttggtgaagttttacaagagactgaacttcgttatgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCATGGCGAGGAGTCTCATGGAAAAATGAGGATCAACGGGCTTACTCTAAGA
species | Oryza sativa |
transcript | LOC_Os10g10170.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|58693842|gb|CK082529.1|CK082529
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|29671045|gb|CB667320.1|CB667320
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|58696063|gb|CK084750.1|CK084750
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: TCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|58691432|gb|CK080119.1|CK080119
genomic: TCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: ATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|29678934|gb|CB675209.1|CB675209
genomic: ATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|29614516|gb|CB619529.1|CB619529
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|58689053|gb|CK077740.1|CK077740
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|58692483|gb|CK081170.1|CK081170
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|58694099|gb|CK082786.1|CK082786
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCAEST: gi|58692218|gb|CK080905.1|CK080905
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
EST: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAG AGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
genomic: AAACAAGTCGGCCTTGATGAAAGGGAGAAGACACTTAAACTTGCTGGAAGgtgaaacaac ... tgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCA
cattagagtacttggtgaagttttacaagagactgaacttcgttatgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCATGGCGAGGAGTCTCATGGAAAAATGAGGATCAACGGGCTTACTCTAAGA
ttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattcttgcataagtttcccttgaaatgtttgttatgtcttatacattagagtacttggtgaagttttacaagagactgaacttcgttatgaaatgcagAGTCGGTCAAGCAGTTGGTTCCCTGCTGAGGAGATTAGGAATCAAATATCATGGCGAGGAGTCTCATGGAAAAATGAGGATCAACGGGCTTACTCTAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT