1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatttttctcacagccattacacacttgctgataaaatttgtttcattctgtccgtcagtatatttctggcataaattgatgacggttttttgcgttacagGGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACGGAGGGTAGGTATCTGAGAGATGTGTGGTAAGAGGTGATTTTCAGCACAC
species | Oryza sativa |
transcript | LOC_Os08g14570.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GCATGGCCAGAGATGTACATAGAGTTCTCCACACCATTGTACAGGAACAG GGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACGEST: gi|88342071|gb|CI644408.1|CI644408
genomic: GCATGGCCAGAGATGTACATAGAGTTCTCCACACCATTGTACAGGAACAGgtatttttct ... tgcgttacagGGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACG
EST: GCATGGCCAGAGATGTACATAGAGTTCTCCACACCATTGTACAGGAACAG GGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACGEST: gi|88361943|gb|CI682120.1|CI682120
genomic: GCATGGCCAGAGATGTACATAGAGTTCTCCACACCATTGTACAGGAACAGgtatttttct ... tgcgttacagGGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACG
EST: GCATGGCCAGAGATGTACATAGAGTTCTCCACACCATTGTACAGGAACAG GGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACG
genomic: GCATGGCCAGAGATGTACATAGAGTTCTCCACACCATTGTACAGGAACAGgtatttttct ... tgcgttacagGGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACG
ttctgtccgtcagtatatttctggcataaattgatgacggttttttgcgttacagGGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACGGAGGGTAGGTATCTGAGAGATGTGTGGTAAGAGGTGATTTTCAGCACAC
aattgat putative branch site (score: 66)
ttttttgc putative PPT
ataaattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttctcacagccattacacacttgctgataaaatttgtttcattctgtccgtcagtatatttctggcataaattgatgacggttttttgcgttacagGGATCACTTGACAGCTCTAAGGCTGAGAGCTTTGTGAAGAGCCTCCAAACGGAGGGTAGGTATCTGAGAGATGTGTGGTAAGAGGTGATTTTCAGCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG