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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtctcacttttcctcaaccatagcagctgatatattgggtcttgaaattctaatactattataattttgcacgtcatgactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGGATAATACTATGTACGAATTGGATTCCACAAACCTTGGGGACTCATCATA

Basic information

species Oryza sativa
transcript LOC_Os08g10310.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665452|gb|CB661727.1|CB661727
EST:     GCTAAACTGCCTCCAGGAAGATACTCCATGTTTTCGTGGTTCTCCAAAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGG
genomic: GCTAAACTGCCTCCAGGAAGATACTCCATGTTTTCGTGGTTCTCCAAAATgtatatgtct ... atgactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGG
EST: gi|33801536|gb|CF326640.1|CF326640
EST:     GCTAAACTGCCTCCAGGAAGATACTCCATGTTTTCGTGGTTCTCCAAAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGG
genomic: GCTAAACTGCCTCCAGGAAGATACTCCATGTTTTCGTGGTTCTCCAAAATgtatatgtct ... atgactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGG
EST: gi|29644823|gb|CB649830.1|CB649830
EST:     GCTAAACTGCCTCCAGGAAGATACTCCATGTTTTCGTGGTTCTCCAAAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGG
genomic: GCTAAACTGCCTCCAGGAAGATACTCCATGTTTTCGTGGTTCTCCAAAATgtatatgtct ... atgactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattgggtcttgaaattctaatactattataattttgcacgtcatgactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAATAGATCTATCAGAGTTTCGGATAATACTATGTACGAATTGGATTCCACAAACCTTGGGGACTCATCATA
                 ttctaat  putative branch site (score: 2)
         tcttgaaattctaata  TA-rich tract