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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttaactcatttgcttgctttattgttgcacttcaaaattcttcaagtaattttgggcacaatatctaatcatcagttgtgcctttgttggtgtgcagGAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTGGTGCTGACTCTGTCGTTAGGCTTTATTGCGACTAAAGGTGCTTTCGAAA

Basic information

species Oryza sativa
transcript LOC_Os07g25440.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86592361|gb|CI251015.1|CI251015
EST:     TATTGTACCATTGGAAATTCTTCGTGGTCATTCAAGTTCAGATGGAAGAG                         GAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG
genomic: TATTGTACCATTGGAAATTCTTCGTGGTCATTCAAGTTCAGATGGAAGAGgtacatatat ... tggtgtgcagGAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG
EST: gi|88830316|gb|CI076572.1|CI076572
EST:     TTCGTGGTCATTCAAGTTCAGATGGAAGAG                         GAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG
genomic: TTCGTGGTCATTCAAGTTCAGATGGAAGAGgtacatatat ... tggtgtgcagGAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG
EST: gi|88486281|gb|CI423552.1|CI423552
EST:     AAGTTCAGATGGAAGAG                         GAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG
genomic: AAGTTCAGATGGAAGAGgtacatatat ... tggtgtgcagGAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG
EST: gi|87040358|gb|CI194980.1|CI194980
EST:     TATTGTACCATTGGAAATTCTTCGTGGTCATTCAAGTTCAGATGGAAGAG                         GAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG
genomic: TATTGTACCATTGGAAATTCTTCGTGGTCATTCAAGTTCAGATGGAAGAGgtacatatat ... tggtgtgcagGAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtaattttgggcacaatatctaatcatcagttgtgcctttgttggtgtgcagGAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGTTGTTCACTGCTGGTGCTGACTCTGTCGTTAGGCTTTATTGCGACTAAAGGTGCTTTCGAAA
                    atctaat  putative branch site (score: 3)
                                      cctttgtt  putative PPT
                 aatatctaat  TA-rich tract