1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtcaaatccttggtcttggtcttgctatcccactggttaaaaaatattaaccatgtgttattttgtattaacatggtttccaaaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAGGTCTTGGTCTTCTCTGCCATCTCCTTAGGTTTGGTGTTCGTTGGTTCCT
species | Oryza sativa |
transcript | LOC_Os06g48640.3 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAG GTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAGEST: gi|58653587|gb|CK042267.1|CK042267
genomic: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAGgtcaaatcct ... aaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
EST: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAG GTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAGEST: gi|25797752|gb|CA753713.1|CA753713
genomic: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAGgtcaaatcct ... aaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
EST: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAG GTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
genomic: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAGgtcaaatcct ... aaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
taaaaaatattaaccatgtgttattttgtattaacatggtttccaaaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAGGTCTTGGTCTTCTCTGCCATCTCCTTAGGTTTGGTGTTCGTTGGTTCCT
tattaac putative branch site (score: 88)
ttattttgtattaaca TA-rich tract