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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaatccttggtcttggtcttgctatcccactggttaaaaaatattaaccatgtgttattttgtattaacatggtttccaaaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAGGTCTTGGTCTTCTCTGCCATCTCCTTAGGTTTGGTGTTCGTTGGTTCCT

Basic information

species Oryza sativa
transcript LOC_Os06g48640.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623913|gb|CB628924.1|CB628924
EST:     GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAG                         GTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
genomic: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAGgtcaaatcct ... aaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
EST: gi|58653587|gb|CK042267.1|CK042267
EST:     GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAG                         GTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
genomic: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAGgtcaaatcct ... aaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
EST: gi|25797752|gb|CA753713.1|CA753713
EST:     GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAG                         GTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG
genomic: GAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAGGAGgtcaaatcct ... aaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaaatattaaccatgtgttattttgtattaacatggtttccaaaaatttcagGTTAGAGAGAATCTCACAGCTTTTCTGACTGACTCCCAAGTACCTCTGGAGGTCTTGGTCTTCTCTGCCATCTCCTTAGGTTTGGTGTTCGTTGGTTCCT
                            tattaac  putative branch site (score: 1)
                    ttattttgtattaaca  TA-rich tract