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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaacactaaatgcagtgtctttttctttttgtattttctattggtgggtctatgcagatctccaccatgttcaataccctttatgctcctaacagGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGAC

Basic information

species Oryza sativa
transcript LOC_Os06g13050.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g13050.1 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM2G110289_T01 (Zea mays), 3'ss of exon 15
gtaagtaaacactaaatgcagtgtctttttctttttgtattttctattggtgggtctatgcagatctccaccatgttcaataccctttatgctcctaacagGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGAC
|||||  |||||  |  |||              |  |||    ||||||       ||  | || ||    ||  |||| |   |||||  | || |||||| || |||||||| ||||||||||| || || || ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||| ||||| ||||
gtaagcgaacacacagcgca--------------tcctatcagttattggcattcggatatatatatctcgtattctcaa-attatttatatttctgacagGACGACGGAGCATTCGCATTGGCACAGGCGCTCAAGGCTAACGAGGATCTGGCGGTCACGTCATTAAATCTCGCAAACAACTTCTTCACGAAATTCGGAC

upper sequence: LOC_Os06g13050.1 (Oryza sativa), 3'ss of exon 16
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtaaacactaaatgcagtgtctttttctttttgtattttctattggtgggtctatgcagatctccaccatgttcaataccctttatgctcctaacagGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGAC
                |   | |  ||  | || ||| | ||  | ||     | |  |   |   | || ||   ||  |  |  | ||  |   |||||||||| || ||||||||  | || |||||||| || |||||||||||| | |||||||| ||  |||| ||||| | ||||||| |||| ||||||||||
---------------gtatgg-gctttggttttcttgaaattctttttcacaagacagtagcgcattgcagcagcatc--tcactgtaattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgggtctatgcagatctccaccatgttcaataccctttatgctcctaacagGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGAC
                                    ccctttatgctcct  CT-rich tract
                             ttcaata  TA-rich tract