1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...acgttatagattgatgtcaacttctaggtttaccttctgcttgctgcttttataggtttacaaccaacacgtagtcttagtgtgttatttatttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG
species | Oryza sativa |
transcript | LOC_Os06g10280.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TATTGCGCATACACAG TGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGEST: gi|88265983|gb|CI376885.1|CI376885
genomic: TATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
EST: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG TGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGEST: gi|86861509|gb|CI328196.1|CI328196
genomic: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
EST: AGTTAATGAGCTCCTGGTTCTTTTCCTGTATTGCGCATACACAG TGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGEST: gi|86435856|gb|CI107089.1|CI107089
genomic: AGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
EST: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG TGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGEST: gi|86536568|gb|CI176774.1|CI176774
genomic: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
EST: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG TGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGEST: gi|86869993|gb|CI317914.1|CI317914
genomic: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
EST: TCCTTTATTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCGTACACAG -GGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGEST: gi|88524956|gb|CI453573.1|CI453573
genomic: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
EST: GTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG TGGGCCTTTACCTGCATCTTGCC-TNTTCTGTTGTGCATGAAATCAAGGATEST: gi|38483180|gb|CF966982.1|CF966982
genomic: GTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGT-TTCTGTTGTGCATGAAATCAAGGAT
EST: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAG TGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
genomic: TCCTTTAGTTGATGAGCTGCTGGTTCTTTTCCTGTATTGCGCATACACAGgtgaactgat ... atttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATG
gcttttataggtttacaaccaacacgtagtcttagtgtgttatttatttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG
tttattt CT-rich tract
tgtgttatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgttatagattgatgtcaacttctaggtttaccttctgcttgctgcttttataggtttacaaccaacacgtagtcttagtgtgttatttatttgtgcagTGGGCCTTTACCTGCATCTTGCCGTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - ttgatgt
- - - - - - - - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtta