1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatacccatttaagatggtttgtcatgctcatttcataggggaggatttgtggctgttgcacttggaattataacaaactataattacctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTGTCAGGCTCCAGAGGGTAACCATAAACTGACAAAGGCAGAGGCAATGAA
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|58685705|gb|CK074392.1|CK074392
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|88691087|gb|CI735166.1|CI735166
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|88691956|gb|CI735531.1|CI735531
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|218500572|gb|FG950928.1|FG950928
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTEST: gi|66916087|gb|CX102935.1|CX102935
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|58687727|gb|CK076414.1|CK076414
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: CCAGCCGTTAACTTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTEST: gi|29641487|gb|CB646494.1|CB646494
genomic: CCAGCCGTTAA-TTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|58593890|gb|CF992198.1|CF992198
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|29666198|gb|CB662473.1|CB662473
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|29626826|gb|CB631837.1|CB631837
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|58684250|gb|CK072937.1|CK072937
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|88689214|gb|CI732790.1|CI732790
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCACCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|29626870|gb|CB631881.1|CB631881
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|88691942|gb|CI735517.1|CI735517
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTEST: gi|88688550|gb|CI732126.1|CI732126
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
ggatttgtggctgttgcacttggaattataacaaactataattacctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTGTCAGGCTCCAGAGGGTAACCATAAACTGACAAAGGCAGAGGCAATGAA
ttataac putative branch site (score: 52)
ttacctcctt putative PPT
aattataacaaactat TA-rich tract