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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacccatttaagatggtttgtcatgctcatttcataggggaggatttgtggctgttgcacttggaattataacaaactataattacctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTGTCAGGCTCCAGAGGGTAACCATAAACTGACAAAGGCAGAGGCAATGAA

Basic information

species Oryza sativa
transcript LOC_Os06g02550.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29638209|gb|CB643218.1|CB643218
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|58685705|gb|CK074392.1|CK074392
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|88691087|gb|CI735166.1|CI735166
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|88691956|gb|CI735531.1|CI735531
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|218500572|gb|FG950928.1|FG950928
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCT
EST: gi|66916087|gb|CX102935.1|CX102935
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|58687727|gb|CK076414.1|CK076414
EST:     CCAGCCGTTAACTTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTT
genomic: CCAGCCGTTAA-TTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTT
EST: gi|29641487|gb|CB646494.1|CB646494
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|58593890|gb|CF992198.1|CF992198
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|29666198|gb|CB662473.1|CB662473
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|29626826|gb|CB631837.1|CB631837
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|58684250|gb|CK072937.1|CK072937
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|88689214|gb|CI732790.1|CI732790
EST:     ACCACCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|29626870|gb|CB631881.1|CB631881
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|88691942|gb|CI735517.1|CI735517
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
EST: gi|88688550|gb|CI732126.1|CI732126
EST:     ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAG                         CTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT
genomic: ACCAGCCGTTAATTACTCATACTTGAGCGCTAACACCCCGGCAAGAGCAGgtatacccat ... ctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttgtggctgttgcacttggaattataacaaactataattacctccttgtagCTGGTGTGCAAAGGAAGCTGGAGTTGGATCACCAGGTGAATATGAATTCTTGTCAGGCTCCAGAGGGTAACCATAAACTGACAAAGGCAGAGGCAATGAA
                         ttataac  putative branch site (score: 2)
                                         ttacctcctt  putative PPT
                       aattataacaaactat  TA-rich tract