1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatgccatttatttccatggtttttttaaaaaaattattcagcatctttaacttgtattgtttttacagGATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTGGCTCAGAGAGCAAGGGACAACAGCCTTAAGCCAGAGGATTATGAG
species | Oryza sativa |
transcript | LOC_Os06g01630.5 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGTTTGTCCCCGTAATAAGG GATGCTGCCAAGAAAGGGCCTAGCCCCTATCGCTGGTGAGGTGAAGCAACTEST: gi|38477221|gb|CF961354.1|CF961354
genomic: GGCTTGTTTGTTCCCGTAATAAGGgtatgccatt ... gtttttacagGATGCTGACAAG-AAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACT
EST: TCAATGTTGCTGTACAAACTGAGGATGGCTTGTGTGTTCCCGTAATAAGG GATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTGEST: gi|58585940|gb|CF984248.1|CF984248
genomic: TCAATGTTGCTGTACAAACTGAGGATGGCTTGTTTGTTCCCGTAATAAGGgtatgccatt ... gtttttacagGATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTG
EST: TCAATGTTGCTGTACAAACTGAGGATGGCTTGTTTGTGGCCGTAATAAGG GATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTGEST: gi|24468761|gb|CA305710.1|CA305710
genomic: TCAATGTTGCTGTACAAACTGAGGATGGCTTGTTTGTTCCCGTAATAAGGgtatgccatt ... gtttttacagGATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTG
EST: GTACAAACTGAGGATGGCTTGTTTGTTCCCGTAATAAGG GATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTTEST: gi|2442983|gb|C74754.1|C74754
genomic: GTACAAACTGAGGATGGCTTGTTTGTTCCCGTAATAAGGgtatgccatt ... gtttttacagGATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAAC-T
EST: TCAATGTTGCTGTACAA-CTGAGGATGGCTTGTTTGTNCC-GTAATAAGG GATGCTGNCA-GAAGGGCN-AGCCACTATCGCTGAT
genomic: TCAATGTTGCTGTACAAACTGAGGATGGCTTGTTTGTTCCCGTAATAAGGgtatgccatt ... gtttttacagGATGCTGACAAGAAGGGCCTAGCCACTATCGCTGAT
ccatggtttttttaaaaaaattattcagcatctttaacttgtattgtttttacagGATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTGGCTCAGAGAGCAAGGGACAACAGCCTTAAGCCAGAGGATTATGAG
ctttaac putative branch site (score: 21)
ttgttttt putative PPT
tttttttaaaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccatttatttccatggtttttttaaaaaaattattcagcatctttaacttgtattgtttttacagGATGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTGGCTCAGAGAGCAAGGGACAACAGCCTTAAGCCAGAGGATTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT