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...atcagtttttctccttgaagtttactattcaataaactacctgtgctgaaaacctttattttgtgtctcattgtatctgactgaatttctctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGTTGGAAAT
species | Oryza sativa |
transcript | LOC_Os05g39230.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAAEST: gi|88245697|gb|CI245546.1|CI245546
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAAEST: gi|27547089|gb|CA765265.2|CA765265
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAAEST: gi|29623422|gb|CB628433.1|CB628433
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAAEST: gi|88478394|gb|CI415665.1|CI415665
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CCACTGTTCATAGGATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAAEST: gi|86250775|gb|CI007638.1|CI007638
genomic: CCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAAEST: gi|88478559|gb|CI415830.1|CI415830
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: TGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAAEST: gi|58607689|gb|CK035722.1|CK035722
genomic: TGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAAEST: gi|88828339|gb|CI000448.1|CI000448
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CTTTGAAGTTCCCACTGGTCATAGAATGTGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAAEST: gi|86840134|gb|CI332756.1|CI332756
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
EST: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAG AATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
genomic: CTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGgtttgttaat ... ctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAA
ctgaaaacctttattttgtgtctcattgtatctgactgaatttctctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGTTGGAAAT
atctgac putative branch site (score: 12)
tttctctatc putative PPT
tttattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagtttttctccttgaagtttactattcaataaactacctgtgctgaaaacctttattttgtgtctcattgtatctgactgaatttctctatcaccagAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGTTGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA