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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatatatcaggacatatataattcaaacatcaaaattatctggtttactcttctcatctgtgctaaaaataacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAAAGCTAGCCACAGACAATTTCAGTTCTCAAAATATTCTAGGCGAAGGTGG

Basic information

species Oryza sativa
transcript LOC_Os05g17604.4
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672836|gb|CB669111.1|CB669111
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29664574|gb|CB660849.1|CB660849
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29675944|gb|CB672219.1|CB672219
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29627532|gb|CB632543.1|CB632543
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29624376|gb|CB629387.1|CB629387
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29630956|gb|CB635965.1|CB635965
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29622648|gb|CB627659.1|CB627659
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29676653|gb|CB672928.1|CB672928
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29627200|gb|CB632211.1|CB632211
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
EST: gi|29680540|gb|CB676815.1|CB676815
EST:     AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAG                         AACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA
genomic: AGTGTTTACACTAGTAAAGAAGCGGAGAGCATTGGCACAACAGAAAGAAGgtattatata ... taacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatcaaaattatctggtttactcttctcatctgtgctaaaaataacatgcagAACTATACAACCTGGTTGGACGACCTGACGTTTTTAGTTATGCTGAGCTAAAGCTAGCCACAGACAATTTCAGTTCTCAAAATATTCTAGGCGAAGGTGG
                                          aaataac  putative branch site (score: 2)
                                       taaaaataacat  TA-rich tract