1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaggttgaacgcaaatattgtataatccaatacaatccttccaggaggtgctgaatattattttcccctgattcccagCTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAACAATCTGTTTCATTGAGTAATTACCAAAGAAAGCTGGTTGATGTGCACA
species | Oryza sativa |
transcript | LOC_Os04g46450.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAG CTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAAEST: gi|25777950|gb|CA752700.1|CA752700
genomic: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAGgtaggttgaa ... tgattcccagCTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAA
EST: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAG CTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAAEST: gi|218501888|gb|FG970488.1|FG970488
genomic: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAGgtaggttgaa ... tgattcccagCTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAA
EST: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAG CTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAAEST: gi|218487991|gb|FG954428.1|FG954428
genomic: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAGgtaggttgaa ... tgattcccagCTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAA
EST: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAG CTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAA
genomic: GCTCTTTGATGGATCTGTACAACCAGAAAATTGTTTCCTTAGAAGATCAGgtaggttgaa ... tgattcccagCTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAA
aatccaatacaatccttccaggaggtgctgaatattattttcccctgattcccagCTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAACAATCTGTTTCATTGAGTAATTACCAAAGAAAGCTGGTTGATGTGCACA
ccctgat putative branch site (score: 28)
ttttcccctgattccc CT-rich tract
tgaatattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttgaacgcaaatattgtataatccaatacaatccttccaggaggtgctgaatattattttcccctgattcccagCTTAAAATGTGGTCTGATCGGGTTGGGAAACTTCAAGAGGATGGATGGCAACAATCTGTTTCATTGAGTAATTACCAAAGAAAGCTGGTTGATGTGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG