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gttaatattcaagaaaaagatatacttaaggttagttgtctatttattaccccacatctatcttgacgtttgatgaccctgccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGAGTCTACATGGCTAGTATGGACGAGGAGGTGACAGGAACTAGGGTTGCTG
species | Oryza sativa |
transcript | LOC_Os04g11880.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TNTCCGAACCAGAAACTTCATTAAGACATGGNTGCAATGATATACTTAAG GCTGATTGCGT-AACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGAEST: gi|55409184|gb|CV721560.1|CV721560
genomic: TAT-CGAA-CAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
EST: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG GCTGATTGCGTAAACCTTTTGEST: gi|218488547|gb|FG955820.1|FG955820
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTG
EST: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG GCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGAEST: gi|58688189|gb|CK076876.1|CK076876
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
EST: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG GCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGAEST: gi|218492660|gb|FG966164.1|FG966164
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
EST: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG GCTGATTGCGTAAACCTTTTGGTAAAATATT
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATT
tgtctatttattaccccacatctatcttgacgtttgatgaccctgccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGAGTCTACATGGCTAGTATGGACGAGGAGGTGACAGGAACTAGGGTTGCTG
ccctgcc CT-rich tract
atttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatattcaagaaaaagatatacttaaggttagttgtctatttattaccccacatctatcttgacgtttgatgaccctgccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGAGTCTACATGGCTAGTATGGACGAGGAGGTGACAGGAACTAGGGTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG