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...ctggttgagttttcgttcacttttcctttttttttaaaacttatccatgtagcggaatgacaagtagcttatgtaacatcttttctatttgtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTATTTACATTGCTGTACAGAATGTCAGCTTTGAGCTATCTCAG
species | Oryza sativa |
transcript | LOC_Os03g50300.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAA ATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTEST: gi|29665524|gb|CB661799.1|CB661799
genomic: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAAgtatgacacc ... gtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGT
EST: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAA ATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTEST: gi|38478656|gb|CF962789.1|CF962789
genomic: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAAgtatgacacc ... gtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGT
EST: ACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAA ATATGCCCGGACATTTATAGTCTTCTACACTATTGGATTACATCTCCTTGTEST: gi|25803240|gb|CA759201.1|CA759201
genomic: ACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAAgtatgacacc ... gtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGT
EST: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAA ATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTEST: gi|55409428|gb|CV721804.1|CV721804
genomic: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAAgtatgacacc ... gtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGT
EST: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAA ATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTEST: gi|112786800|gb|EE591464.1|EE591464
genomic: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAAgtatgacacc ... gtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGT
EST: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAA ATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGT
genomic: TTAAGAGACAAAATCACTCTTAGCAGTGGACGTTTTCTCCTTGGTAACAAgtatgacacc ... gtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGT
catgtagcggaatgacaagtagcttatgtaacatcttttctatttgtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTATTTACATTGCTGTACAGAATGTCAGCTTTGAGCTATCTCAG
atgtaac putative branch site (score: 25)
tcttttctatttgt CT-rich tract
ttttctatttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggttgagttttcgttcacttttcctttttttttaaaacttatccatgtagcggaatgacaagtagcttatgtaacatcttttctatttgtattcacagATATGCCCGGACATTTATATTCTTCTACACTATTGGATTACATCTCCTTGTATTTACATTGCTGTACAGAATGTCAGCTTTGAGCTATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
ctggttg
- - - - - - - - - - - - - - - - - - - - - atccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg