1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ctgccaagtcgtcgtagatttattatactatgtgtagtatttccttaaccatgcaatgcttctaagttctaaccgtgtatcattttttaaatattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAA
species | Oryza sativa |
transcript | LOC_Os03g49420.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAG GTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGEST: gi|27576974|gb|CA999668.1|CA999668
genomic: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGgtgtcttaca ... atattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAG
EST: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAG GTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGEST: gi|29629241|gb|CB634252.1|CB634252
genomic: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGgtgtcttaca ... atattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAG
EST: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAG GTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGEST: gi|29679232|gb|CB675507.1|CB675507
genomic: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGgtgtcttaca ... atattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAG
EST: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAG GTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGEST: gi|29681491|gb|CB677766.1|CB677766
genomic: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGgtgtcttaca ... atattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAG
EST: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAG GTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAG
genomic: CTCTTGGGAAAATATGTCAGTTTCATCGTGATGGCATTGATGCATCTCAGgtgtcttaca ... atattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAG
taaccatgcaatgcttctaagttctaaccgtgtatcattttttaaatattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAA
ttctaac putative branch site (score: 1)
tgtatcattttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgccaagtcgtcgtagatttattatactatgtgtagtatttccttaaccatgcaatgcttctaagttctaaccgtgtatcattttttaaatattaacagGTTGTTCCTGCTTGGTTAAGTTGTTTGCCAATAAAAAATGACTTAATCGAGGCCAAGATAGTTCATGAACAACTCTGTACGATGCTTGAGAA
-tgccaag
- - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtgta