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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgtggtgcgcctttttgtattgtcgctgatacatatttacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG

Basic information

species Oryza sativa
transcript LOC_Os03g43930.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g43930.2 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM2G423337_T01 (Zea mays), 3'ss of exon 9
gtcagtgtggtgcgcctttttgtattgtcgctgatacata--tttacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG
   |   ||||    ||   | | || ||||   | | ||  ||  |||||  ||  ||| ||||       || || ||  |    |     |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
-gtaacttggtcgttctcgctttgtt-tcgccagttcgtagcttggcattgtggt-gtct-ggctggtgttgaagttttg--tggaaccgtgaattcagGCTGCTCCCGTGTTCACCTTTGCCAACCAAGCCGGCCTGGACATGCTGGAGACGACGCTGATTGCGCTCCAGGACATCTCCCTTGAGAAGATCCTTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86437747|gb|CI119667.1|CI119667
EST:     CAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: CAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040822|gb|CI195444.1|CI195444
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87033348|gb|CI187972.1|CI187972
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86481983|gb|CI124616.1|CI124616
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87022833|gb|CI269769.1|CI269769
EST:     GAAAGCAATGTGGCAAACACTCTGATTCAATCATGTGCGGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: GAAAGCAATGTGGC-AACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88233458|gb|CI233307.1|CI233307
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGGTCAGTGTG                 
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTG-A----A----Ggtcagtgtgg ... ta
EST: gi|88234404|gb|CI234253.1|CI234253
EST:     GCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: GCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036584|gb|CI191206.1|CI191206
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88247554|gb|CI247403.1|CI247403
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88197905|gb|CI197755.1|CI197755
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036373|gb|CI190995.1|CI190995
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039024|gb|CI193646.1|CI193646
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGAGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236264|gb|CI235466.1|CI235466
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039677|gb|CI194299.1|CI194299
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86480098|gb|CI122731.1|CI122731
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87013876|gb|CI271267.1|CI271267
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88234749|gb|CI234598.1|CI234598
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235250|gb|CI236452.1|CI236452
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87037463|gb|CI192085.1|CI192085
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86487572|gb|CI130205.1|CI130205
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGTTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87016506|gb|CI273716.1|CI273716
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86867896|gb|CI342775.1|CI342775
EST:     CTCTGATTCAATCATGTCCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGGCTGGA
genomic: CTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACAT-GCTGGA
EST: gi|86855875|gb|CI271094.1|CI271094
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039979|gb|CI194601.1|CI194601
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87014872|gb|CI271471.1|CI271471
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86827312|gb|CI270963.1|CI270963
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87037625|gb|CI192247.1|CI192247
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88975223|gb|CI023474.1|CI023474
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036851|gb|CI191473.1|CI191473
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCACCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88208545|gb|CI208394.1|CI208394
EST:     ACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: ACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86499474|gb|CI142107.1|CI142107
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86493192|gb|CI135825.1|CI135825
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235826|gb|CI235028.1|CI235028
EST:     GCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: GCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236276|gb|CI235478.1|CI235478
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88991094|gb|CI108481.1|CI108481
EST:     AAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: AAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|218503853|gb|FG970110.1|FG970110
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88984269|gb|CI020184.1|CI020184
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87039801|gb|CI194423.1|CI194423
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86486713|gb|CI129346.1|CI129346
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86482094|gb|CI124727.1|CI124727
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86437481|gb|CI119203.1|CI119203
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87038610|gb|CI192649.1|CI192649
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86482556|gb|CI125189.1|CI125189
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCGTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040080|gb|CI193289.1|CI193289
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88233296|gb|CI233145.1|CI233145
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88957022|gb|CI095071.1|CI095071
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86436847|gb|CI118569.1|CI118569
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86486543|gb|CI129176.1|CI129176
EST:     AGCAATGTGGCAACACTGGGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: AGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236401|gb|CI235603.1|CI235603
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235992|gb|CI235194.1|CI235194
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87034732|gb|CI189356.1|CI189356
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTCCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88197640|gb|CI197490.1|CI197490
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCACCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87027472|gb|CI272237.1|CI272237
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040785|gb|CI195407.1|CI195407
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86478938|gb|CI121571.1|CI121571
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88983063|gb|CI020627.1|CI020627
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235904|gb|CI235106.1|CI235106
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235827|gb|CI235029.1|CI235029
EST:     GGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: GGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236633|gb|CI235835.1|CI235835
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88198258|gb|CI198108.1|CI198108
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87037761|gb|CI192383.1|CI192383
EST:     GAAAGCAATTGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: GAAAGCAA-TGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236116|gb|CI235318.1|CI235318
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|86487881|gb|CI130514.1|CI130514
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88838773|gb|CI376311.1|CI376311
EST:     ATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: ATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|25802926|gb|CA758887.1|CA758887
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCTGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88235694|gb|CI234896.1|CI234896
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88829447|gb|CI074317.1|CI074317
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87022878|gb|CI269814.1|CI269814
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88197420|gb|CI196727.1|CI196727
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87041845|gb|CI196467.1|CI196467
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87036221|gb|CI190843.1|CI190843
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88839046|gb|CI377970.1|CI377970
EST:     GTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAACCGGCCTCGACATGCT-GAG
genomic: GTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87023252|gb|CI272080.1|CI272080
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88837847|gb|CI371425.1|CI371425
EST:     CAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: CAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88248987|gb|CI248836.1|CI248836
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87029425|gb|CI250358.1|CI250358
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|87040859|gb|CI195481.1|CI195481
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
EST: gi|88236073|gb|CI235275.1|CI235275
EST:     TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAG                         GCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG
genomic: TGAAAGCAATGTGGCAACACTCTGATTCAATCATGTGCTGCTCCCTGAAGgtcagtgtgg ... taccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG
                                         tgcttac  putative branch site (score: 2)
                        aaacaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagtgtggtgcgcctttttgtattgtcgctgatacatatttacattgccgttatctaggctaacaaacaaattctggctactgcttaccattcagGCTGCTCCTGTGTTCACCTTCGCCAACCAAGCCGGCCTCGACATGCTGGAGACGACGCTGATTGCTCTCCAGGACATCTCGCTCGAGAAGATCCTTGATG

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